User contributions
(Latest | Earliest) View (newer 250) (older 250) (20 | 50 | 100 | 250 | 500).
- 10:23, 22 July 2020 (diff | hist) . . (+87) . . AutoDock4 Pose Reproduction Tutorial (→Trouble Shooting)
- 10:22, 22 July 2020 (diff | hist) . . (+100) . . AutoDock4 Pose Reproduction Tutorial (→Trouble Shooting)
- 10:18, 22 July 2020 (diff | hist) . . (0) . . N File:Problematic Ligands.png (top)
- 10:17, 22 July 2020 (diff | hist) . . (+45) . . AutoDock4 Pose Reproduction Tutorial (→Trouble Shooting)
- 10:13, 22 July 2020 (diff | hist) . . (+174) . . AutoDock4 Pose Reproduction Tutorial (→Trouble Shooting)
- 14:46, 21 July 2020 (diff | hist) . . (+112) . . AutoDock4 Pose Reproduction Tutorial (→III.Preparing Receptors and Ligands)
- 14:45, 21 July 2020 (diff | hist) . . (+117) . . AutoDock4 Pose Reproduction Tutorial (→IV.Preparing Grids)
- 14:22, 21 July 2020 (diff | hist) . . (+997) . . AutoDock4 Pose Reproduction Tutorial (→IV.Preparing Grids)
- 14:10, 21 July 2020 (diff | hist) . . (+696) . . AutoDock4 Pose Reproduction Tutorial
- 14:04, 21 July 2020 (diff | hist) . . (+893) . . AutoDock4 Pose Reproduction Tutorial (→V.Docking Ligands)
- 13:32, 21 July 2020 (diff | hist) . . (+151) . . AutoDock4 Pose Reproduction Tutorial (→Trouble Shooting)
- 11:20, 21 July 2020 (diff | hist) . . (+77) . . AutoDock4 Pose Reproduction Tutorial (→Trouble Shooting)
- 11:19, 21 July 2020 (diff | hist) . . (+743) . . AutoDock4 Pose Reproduction Tutorial
- 10:31, 21 July 2020 (diff | hist) . . (+1,012) . . AutoDock4 Pose Reproduction Tutorial (→IV.Preparing Grids)
- 16:11, 20 July 2020 (diff | hist) . . (+1,160) . . AutoDock4 Pose Reproduction Tutorial
- 15:02, 17 July 2020 (diff | hist) . . (+15) . . AutoDock4 Pose Reproduction Tutorial (→I. Introduction)
- 14:55, 17 July 2020 (diff | hist) . . (+869) . . AutoDock4 Pose Reproduction Tutorial
- 14:54, 17 July 2020 (diff | hist) . . (+22) . . AutoDock4 Pose Reproduction Tutorial
- 14:53, 17 July 2020 (diff | hist) . . (+205) . . AutoDock4 Pose Reproduction Tutorial (→II.Prepping Directories)
- 13:01, 17 July 2020 (diff | hist) . . (+845) . . N AutoDock4 Pose Reproduction Tutorial (Created page with "The purpose of this tutorial is to provide members of the Rizzo lab a way to benchmark the AutoDock4 software to compare the Pose Reproduction success rates against the DOCK6...")
- 12:25, 17 July 2020 (diff | hist) . . (0) . . Rizzo Lab Information and Tutorials (→AutoDock4)
- 12:24, 17 July 2020 (diff | hist) . . (+11) . . Rizzo Lab Information and Tutorials
- 12:23, 17 July 2020 (diff | hist) . . (+37) . . Rizzo Lab Information and Tutorials (→AutoDock4)
- 11:47, 16 July 2020 (diff | hist) . . (+46) . . Rizzo Lab Information and Tutorials
- 15:48, 15 July 2020 (diff | hist) . . (-69) . . DOCK6 POSE Reproduction (→3.Performing Pose Reproduction)
- 15:48, 15 July 2020 (diff | hist) . . (-5) . . DOCK6 POSE Reproduction (→3.Performing Pose Reproduction)
- 15:47, 15 July 2020 (diff | hist) . . (+1) . . DOCK6 POSE Reproduction (→4.Generating a CSV and DAT file of Results)
- 15:47, 15 July 2020 (diff | hist) . . (-6) . . DOCK6 POSE Reproduction (→4.Generating a CSV and DAT file of Results)
- 15:47, 15 July 2020 (diff | hist) . . (+1) . . DOCK6 POSE Reproduction (→Files in 121P directory)
- 15:47, 15 July 2020 (diff | hist) . . (-7) . . DOCK6 POSE Reproduction (→3.Performing Pose Reproduction)
- 15:45, 15 July 2020 (diff | hist) . . (-18) . . DOCK6 POSE Reproduction (→II. Preparing DOCK directories)
- 15:27, 15 July 2020 (diff | hist) . . (+28) . . DOCK6 POSE Reproduction (→5.Generating a graphs of the results)
- 15:27, 15 July 2020 (diff | hist) . . (0) . . N File:FOR Tutorial 3.png (top)
- 15:26, 15 July 2020 (diff | hist) . . (+28) . . DOCK6 POSE Reproduction (→5.Generating a graphs of the results)
- 15:25, 15 July 2020 (diff | hist) . . (0) . . N File:FOR Tutorial 2.png (top)
- 15:19, 15 July 2020 (diff | hist) . . (+139) . . DOCK6 POSE Reproduction (→4.Generating a CSV and DAT file of Results)
- 14:25, 15 July 2020 (diff | hist) . . (0) . . DOCK6 POSE Reproduction (→I. Introduction)
- 14:24, 15 July 2020 (diff | hist) . . (0) . . N File:Pose Reproduction Intro.JPG (top)
- 14:22, 15 July 2020 (diff | hist) . . (+38) . . DOCK6 POSE Reproduction (→I. Introduction)
- 13:46, 15 July 2020 (diff | hist) . . (-13) . . DOCK6 POSE Reproduction (→I. Introduction)
- 12:22, 15 July 2020 (diff | hist) . . (+804) . . Database Enrichment SB2024 V1 DOCK6.10 A (→IV.Ligand Enrichment Analysis)
- 11:54, 15 July 2020 (diff | hist) . . (+2) . . Database Enrichment SB2024 V1 DOCK6.10 A (→IV.Ligand Enrichment Analysis)
- 11:54, 15 July 2020 (diff | hist) . . (+45) . . Database Enrichment SB2024 V1 DOCK6.10 A (→IV.Ligand Enrichment Analysis)
- 11:51, 15 July 2020 (diff | hist) . . (0) . . N File:1Q4X ligand enrichment DOCK6.9.png (top)
- 11:51, 15 July 2020 (diff | hist) . . (+590) . . Database Enrichment SB2024 V1 DOCK6.10 A (→IV.Ligand Enrichment Analysis)
- 11:28, 15 July 2020 (diff | hist) . . (+13) . . Database Enrichment SB2024 V1 DOCK6.10 A (→II.Prepping systems)
- 11:18, 15 July 2020 (diff | hist) . . (-6) . . Database Enrichment SB2024 V1 DOCK6.10 A (→II.Prepping systems)
- 11:04, 15 July 2020 (diff | hist) . . (+5,570) . . Database Enrichment SB2024 V1 DOCK6.10 A (→III.Docking molecules)
- 10:42, 15 July 2020 (diff | hist) . . (+5,177) . . Database Enrichment SB2024 V1 DOCK6.10 A
- 18:17, 14 July 2020 (diff | hist) . . (+1,137) . . Database Enrichment SB2024 V1 DOCK6.10 A
- 17:26, 14 July 2020 (diff | hist) . . (+1,647) . . N Database Enrichment SB2024 V1 DOCK6.10 A (Created page with "The purpose of this tutorial is to develop a uniform method to test ligand enrichment across the Rizzo lab with the DOCK software. ==I.Introduction== Ligand Enrichment...")
- 12:39, 14 July 2020 (diff | hist) . . (-9) . . Rizzo Lab Information and Tutorials
- 12:38, 14 July 2020 (diff | hist) . . (+18) . . Rizzo Lab Information and Tutorials
- 12:36, 14 July 2020 (diff | hist) . . (+23) . . Rizzo Lab Information and Tutorials
- 12:35, 14 July 2020 (diff | hist) . . (+1,964) . . DOCK6 POSE Reproduction
- 10:57, 14 July 2020 (diff | hist) . . (+1,581) . . N DOCK6 POSE Reproduction (Created page with "The purpose of this tutorial is to provide people with instructions on how to perform a commonly used test, pose reproduction that evaluates DOCK6's ability to reproduce known...")
- 09:41, 14 July 2020 (diff | hist) . . (+29) . . Rizzo Lab Information and Tutorials
- 10:43, 4 May 2020 (diff | hist) . . (-1) . . DOCK VS Benchmarking
- 10:43, 4 May 2020 (diff | hist) . . (+25) . . DOCK VS Benchmarking
- 10:39, 4 May 2020 (diff | hist) . . (-3) . . DOCK VS Benchmarking
- 10:38, 4 May 2020 (diff | hist) . . (+222) . . DOCK VS Benchmarking
- 16:51, 20 April 2020 (diff | hist) . . (+201) . . 2020 Denovo tutorial 1 with PDBID 3VJK (→Focus Denovo) (top)
- 16:49, 20 April 2020 (diff | hist) . . (+5,652) . . 2020 Denovo tutorial 1 with PDBID 3VJK
- 16:36, 20 April 2020 (diff | hist) . . (+5,140) . . 2020 Denovo tutorial 1 with PDBID 3VJK (→Focus Denovo)
- 16:32, 20 April 2020 (diff | hist) . . (+1) . . 2020 Denovo tutorial 1 with PDBID 3VJK (→Focus Denovo)
- 16:32, 20 April 2020 (diff | hist) . . (+90) . . 2020 Denovo tutorial 1 with PDBID 3VJK (→Focus Denovo)
- 16:29, 20 April 2020 (diff | hist) . . (+16) . . 2020 Denovo tutorial 1 with PDBID 3VJK
- 13:03, 6 April 2020 (diff | hist) . . (+26,981) . . N 2020 Denovo tutorial 2 with PDBID 2GQG (Created page with "=I. Focused Growth= First, we will attempt to rebuild the original ligand from a small fragment library generated from only the original ligand itself. ===Fragment Library==...") (top)
- 01:47, 4 April 2020 (diff | hist) . . (0) . . 2020 AMBER tutorial with PDBID 3VJK
- 01:47, 4 April 2020 (diff | hist) . . (0) . . 2020 AMBER tutorial with PDBID 3VJK
- 01:46, 4 April 2020 (diff | hist) . . (0) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:46, 4 April 2020 (diff | hist) . . (+3) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:40, 4 April 2020 (diff | hist) . . (+79) . . 2020 AMBER tutorial with PDBID 3VJK (→Minimization and Equilibration)
- 01:40, 4 April 2020 (diff | hist) . . (+1) . . 2020 AMBER tutorial with PDBID 3VJK (→Minimization and Equilibration)
- 01:39, 4 April 2020 (diff | hist) . . (+6) . . 2020 AMBER tutorial with PDBID 3VJK (→Minimization and Equilibration)
- 01:39, 4 April 2020 (diff | hist) . . (+830) . . 2020 AMBER tutorial with PDBID 3VJK (→Minimization and Equilibration)
- 01:35, 4 April 2020 (diff | hist) . . (+2) . . 2020 AMBER tutorial with PDBID 3VJK
- 01:35, 4 April 2020 (diff | hist) . . (+2) . . 2020 AMBER tutorial with PDBID 3VJK
- 01:34, 4 April 2020 (diff | hist) . . (-6) . . 2020 AMBER tutorial with PDBID 3VJK
- 01:34, 4 April 2020 (diff | hist) . . (0) . . 2020 AMBER tutorial with PDBID 3VJK (→minimization and equilibration)
- 01:33, 4 April 2020 (diff | hist) . . (+4) . . 2020 AMBER tutorial with PDBID 3VJK (→minimization and equilibration)
- 01:33, 4 April 2020 (diff | hist) . . (+9,734) . . 2020 AMBER tutorial with PDBID 3VJK
- 01:24, 4 April 2020 (diff | hist) . . (-128) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:24, 4 April 2020 (diff | hist) . . (+2) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:23, 4 April 2020 (diff | hist) . . (-1) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:22, 4 April 2020 (diff | hist) . . (-2) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:19, 4 April 2020 (diff | hist) . . (+2) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:19, 4 April 2020 (diff | hist) . . (+568) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:11, 4 April 2020 (diff | hist) . . (+234) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 01:10, 4 April 2020 (diff | hist) . . (+426) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 00:57, 4 April 2020 (diff | hist) . . (-3) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 00:54, 4 April 2020 (diff | hist) . . (+2,221) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 00:24, 4 April 2020 (diff | hist) . . (+482) . . 2020 AMBER tutorial with PDBID 3VJK (→Generating Parameters for the simulation)
- 23:58, 3 April 2020 (diff | hist) . . (+3) . . 2020 AMBER tutorial with PDBID 3VJK (→Generating Parameters for the simulation)
- 23:58, 3 April 2020 (diff | hist) . . (+515) . . 2020 AMBER tutorial with PDBID 3VJK (→Generating Parameters for the simulation)
- 23:22, 3 April 2020 (diff | hist) . . (+323) . . 2020 AMBER tutorial with PDBID 3VJK (→Generating Parameters for the simulation)
- 22:35, 3 April 2020 (diff | hist) . . (+381) . . 2020 AMBER tutorial with PDBID 3VJK (→Generating Parameters for the simulation)
- 12:12, 2 April 2020 (diff | hist) . . (+95) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 12:06, 2 April 2020 (diff | hist) . . (+68) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 12:05, 2 April 2020 (diff | hist) . . (0) . . N File:3vjk solvated wet8.jpg (top)
- 12:04, 2 April 2020 (diff | hist) . . (+30) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 12:04, 2 April 2020 (diff | hist) . . (+13) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 12:03, 2 April 2020 (diff | hist) . . (-43) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 12:03, 2 April 2020 (diff | hist) . . (+61) . . 2020 AMBER tutorial with PDBID 3VJK (→Build system with TLeap)
- 12:02, 2 April 2020 (diff | hist) . . (0) . . N File:3vjk wet 10.jpg (top)
- 11:39, 2 April 2020 (diff | hist) . . (+28) . . 2020 AMBER tutorial with PDBID 3VJK
- 15:58, 1 April 2020 (diff | hist) . . (+42) . . AMBER Tutorials
- 18:50, 31 March 2020 (diff | hist) . . (+1) . . 2020 Denovo tutorial 4 with PDBID 6UZW
- 18:49, 31 March 2020 (diff | hist) . . (+6,812) . . 2020 Denovo tutorial 4 with PDBID 6UZW
- 15:20, 30 March 2020 (diff | hist) . . (-1) . . 2020 AMBER tutorial with PDBID 3VJK (→Generating Parameters for the simmulation)
- 15:20, 30 March 2020 (diff | hist) . . (+2) . . 2020 AMBER tutorial with PDBID 3VJK (→Generating Parameters for the simmulation)
- 15:19, 30 March 2020 (diff | hist) . . (+202) . . N 2020 AMBER tutorial with PDBID 3VJK (Created page with "In this tutorial, we will be modeling the dynamics of the ligand with the receptor using AMBER 16. Amber is a molecular dynamics simulation software package. =Generating Para...")
- 15:09, 30 March 2020 (diff | hist) . . (+42) . . AMBER Tutorials
- 14:26, 30 March 2020 (diff | hist) . . (+87) . . 2020 Denovo tutorial 1 with PDBID 3VJK (→Fragment library Generation)
- 14:24, 30 March 2020 (diff | hist) . . (+4) . . 2020 Denovo tutorial 1 with PDBID 3VJK (→Fragment library Generation)
- 14:23, 30 March 2020 (diff | hist) . . (+29) . . 2020 Denovo tutorial 1 with PDBID 3VJK (→I. Focused De Novo)
- 14:22, 30 March 2020 (diff | hist) . . (+234) . . 2020 Denovo tutorial 1 with PDBID 3VJK (→I. Focused De Novo)
- 14:18, 30 March 2020 (diff | hist) . . (+2,730) . . 2020 Denovo tutorial 1 with PDBID 3VJK (→I. Focused De Novo)
- 14:04, 30 March 2020 (diff | hist) . . (+566) . . 2020 Denovo tutorial 1 with PDBID 3VJK
- 13:50, 30 March 2020 (diff | hist) . . (-17) . . 2020 Denovo tutorial 1 with PDBID 3VJK (→"2020 De Novo Design with PDB 3VJK")
- 13:49, 30 March 2020 (diff | hist) . . (+39) . . N 2020 Denovo tutorial 1 with PDBID 3VJK (Created page with "=="2020 De Novo Design with PDB 3VJK"==")
- 20:19, 25 March 2020 (diff | hist) . . (+50) . . 2020 Denovo tutorial 4 with PDBID 6UZW
- 20:15, 25 March 2020 (diff | hist) . . (+207) . . 2020 Denovo tutorial 4 with PDBID 6UZW
- 20:09, 25 March 2020 (diff | hist) . . (-122) . . 2020 Denovo tutorial 4 with PDBID 6UZW
- 20:02, 25 March 2020 (diff | hist) . . (+185) . . 2020 Denovo tutorial 4 with PDBID 6UZW
- 19:55, 25 March 2020 (diff | hist) . . (-14) . . 2020 Denovo tutorial 4 with PDBID 6UZW
- 19:49, 25 March 2020 (diff | hist) . . (-1) . . 2020 Denovo tutorial 4 with PDBID 6UZW
- 19:48, 25 March 2020 (diff | hist) . . (+36) . . 2020 Denovo tutorial 4 with PDBID 6UZW
- 19:46, 25 March 2020 (diff | hist) . . (-231) . . 2020 Denovo tutorial 4 with PDBID 6UZW
- 19:42, 25 March 2020 (diff | hist) . . (-17) . . 2020 Denovo tutorial 4 with PDBID 6UZW
- 19:41, 25 March 2020 (diff | hist) . . (+22) . . 2020 Denovo tutorial 4 with PDBID 6UZW
- 19:39, 25 March 2020 (diff | hist) . . (+3,406) . . 2020 Denovo tutorial 4 with PDBID 6UZW
- 19:38, 25 March 2020 (diff | hist) . . (-3,663) . . 2020 Denovo tutorial 4 with PDBID 6UZW
- 19:37, 25 March 2020 (diff | hist) . . (+17,367) . . N 2020 Denovo tutorial 4 with PDBID 6UZW (Created page with "= I. Focused De Novo Design = This tutorial assumes that you have finished the virtual screening of this system ([https://ringo.ams.stonybrook.edu/index.php/2020_DOCK_tutor...")
- 00:23, 16 March 2020 (diff | hist) . . (+211) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Rescoring Molecules) (top)
- 00:19, 16 March 2020 (diff | hist) . . (+62) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Rescoring Molecules)
- 00:19, 16 March 2020 (diff | hist) . . (+448) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Rescoring Molecules)
- 00:17, 16 March 2020 (diff | hist) . . (+159) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Rescoring Molecules)
- 00:15, 16 March 2020 (diff | hist) . . (+6,842) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Rescoring Molecules)
- 15:29, 15 March 2020 (diff | hist) . . (+105) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Cartesian Minimization)
- 15:27, 15 March 2020 (diff | hist) . . (+69) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Cartesian Minimization)
- 15:26, 15 March 2020 (diff | hist) . . (0) . . N File:3vjk mpi minimized.png (top)
- 14:39, 15 March 2020 (diff | hist) . . (+282) . . 2020 DOCK tutorial 1 with PDBID 3VJK
- 14:36, 15 March 2020 (diff | hist) . . (+585) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Cartesian Minimization)
- 14:20, 15 March 2020 (diff | hist) . . (+4,276) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Cartesian Minimization)
- 12:46, 15 March 2020 (diff | hist) . . (+64) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Virtual Screening)
- 12:45, 15 March 2020 (diff | hist) . . (+22) . . 2020 DOCK tutorial 1 with PDBID 3VJK
- 12:44, 15 March 2020 (diff | hist) . . (+25) . . 2020 DOCK tutorial 1 with PDBID 3VJK
- 12:38, 15 March 2020 (diff | hist) . . (+271) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Virtual Screening with MPI)
- 12:27, 15 March 2020 (diff | hist) . . (+47) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Virtual Screening with MPI)
- 12:26, 15 March 2020 (diff | hist) . . (+140) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Virtual Screening with MPI)
- 12:20, 15 March 2020 (diff | hist) . . (+172) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Virtual Screening with MPI)
- 12:18, 15 March 2020 (diff | hist) . . (+2) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Virtual Screening with MPI)
- 12:18, 15 March 2020 (diff | hist) . . (+1) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Virtual Screening with MPI)
- 12:18, 15 March 2020 (diff | hist) . . (+5) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Virtual Screening with MPI)
- 12:18, 15 March 2020 (diff | hist) . . (+894) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Virtual Screening)
- 11:19, 15 March 2020 (diff | hist) . . (+266) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Virtual Screening)
- 11:13, 15 March 2020 (diff | hist) . . (+245) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Virtual Screening)
- 15:55, 14 March 2020 (diff | hist) . . (+1) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Fixed Anchor Docking)
- 15:55, 14 March 2020 (diff | hist) . . (+107) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Virtual Screening)
- 15:53, 14 March 2020 (diff | hist) . . (+60) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Virtual Screening)
- 15:46, 14 March 2020 (diff | hist) . . (0) . . N File:Time limit.png (top)
- 15:21, 14 March 2020 (diff | hist) . . (+390) . . 2020 DOCK tutorial 1 with PDBID 3VJK (→Virtual Screening)
- 11:51, 13 March 2020 (diff | hist) . . (+61) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→II. Ligand Preparation)
- 14:49, 11 March 2020 (diff | hist) . . (+4) . . 2020 DOCK tutorial 2 with PDBID 2GQG (→Other: dock preparation script) (top)
- 14:49, 11 March 2020 (diff | hist) . . (+9) . . 2020 DOCK tutorial 2 with PDBID 2GQG (→Other: dock preparation script)
- 14:48, 11 March 2020 (diff | hist) . . (+10) . . 2020 DOCK tutorial 2 with PDBID 2GQG (→Other: dock preparation script)
- 14:46, 11 March 2020 (diff | hist) . . (+6,493) . . 2020 DOCK tutorial 2 with PDBID 2GQG
- 11:54, 11 March 2020 (diff | hist) . . (-4) . . 2019 Covalent docking tutorial 1 with PDB 5VKG
- 11:53, 11 March 2020 (diff | hist) . . (+559) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→III. Docking)
- 11:53, 11 March 2020 (diff | hist) . . (0) . . N File:Dock first.png (top)
- 11:46, 11 March 2020 (diff | hist) . . (+749) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→III. Docking)
- 11:46, 11 March 2020 (diff | hist) . . (0) . . N File:Dock result.png (top)
- 11:43, 11 March 2020 (diff | hist) . . (0) . . N File:Lowest rmsd 19.png (top)
- 11:39, 11 March 2020 (diff | hist) . . (+67) . . 2019 Covalent docking tutorial 1 with PDB 5VKG
- 11:38, 11 March 2020 (diff | hist) . . (+87) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→III. Docking)
- 11:35, 11 March 2020 (diff | hist) . . (+4,156) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→III. Docking)
- 11:33, 11 March 2020 (diff | hist) . . (0) . . N File:Lig rec box.png (top)
- 11:32, 11 March 2020 (diff | hist) . . (+1,797) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→III. Box and grid generating)
- 11:25, 11 March 2020 (diff | hist) . . (+330) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→III. Preparing the sphere files)
- 11:25, 11 March 2020 (diff | hist) . . (0) . . N File:Box1.png (top)
- 11:21, 11 March 2020 (diff | hist) . . (0) . . N File:Ligspheres2.png (top)
- 11:20, 11 March 2020 (diff | hist) . . (+63) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→III. Preparing the sphere files)
- 11:14, 11 March 2020 (diff | hist) . . (+682) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→III. Preparing the sphere files for orienting)
- 11:01, 11 March 2020 (diff | hist) . . (+4) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→III. Preparing the sphere files for orienting)
- 11:01, 11 March 2020 (diff | hist) . . (0) . . N File:Ligabsspheres.png (top)
- 10:59, 11 March 2020 (diff | hist) . . (+45) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→III. Preparing the sphere files for orienting)
- 10:56, 11 March 2020 (diff | hist) . . (-10) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→III. Preparing the sphere files for orienting)
- 10:56, 11 March 2020 (diff | hist) . . (+2,424) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→III. Preparing the sphere files for orienting)
- 10:45, 11 March 2020 (diff | hist) . . (0) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→II. Ligand Preparation)
- 10:45, 11 March 2020 (diff | hist) . . (0) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→II. Ligand Preparation)
- 10:44, 11 March 2020 (diff | hist) . . (-1,138) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→II. Ligand Preparation)
- 17:20, 10 March 2020 (diff | hist) . . (+2) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→II. Ligand Preparation)
- 17:19, 10 March 2020 (diff | hist) . . (+79) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→II. Ligand Preparation)
- 17:18, 10 March 2020 (diff | hist) . . (0) . . N File:Lig CBnoH.png (top)
- 17:16, 10 March 2020 (diff | hist) . . (+403) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→II. Ligand Preparation)
- 17:06, 10 March 2020 (diff | hist) . . (+4) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→II. Ligand Preparation)
- 17:04, 10 March 2020 (diff | hist) . . (0) . . N File:Lig h.png (top)
- 17:04, 10 March 2020 (diff | hist) . . (+1) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→II. Ligand Preparation)
- 17:03, 10 March 2020 (diff | hist) . . (+4) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→II. Ligand Preparation)
- 17:00, 10 March 2020 (diff | hist) . . (0) . . N File:Lig bond.png (top)
- 17:00, 10 March 2020 (diff | hist) . . (+366) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→II. Ligand Preparation)
- 16:54, 10 March 2020 (diff | hist) . . (+115) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→II. Ligand Preparation)
- 16:52, 10 March 2020 (diff | hist) . . (+188) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→II. Ligand Preparation)
- 16:47, 10 March 2020 (diff | hist) . . (+15) . . 2019 Covalent docking tutorial 1 with PDB 5VKG (→I. Receptor Preparation)
- 16:45, 10 March 2020 (diff | hist) . . (-142) . . 2019 Covalent docking tutorial 1 with PDB 5VKG
- 16:41, 10 March 2020 (diff | hist) . . (0) . . N File:Cys73.png (top)
- 16:40, 10 March 2020 (diff | hist) . . (+324) . . 2019 Covalent docking tutorial 1 with PDB 5VKG
- 16:32, 10 March 2020 (diff | hist) . . (0) . . N File:Lig rec2A.png (top)
- 16:32, 10 March 2020 (diff | hist) . . (+749) . . 2019 Covalent docking tutorial 1 with PDB 5VKG
- 14:05, 10 March 2020 (diff | hist) . . (0) . . N File:4f4pfocus.png (top)
- 14:05, 10 March 2020 (diff | hist) . . (-1) . . 2020 Denovo tutorial 3 with PDBID 4F4P (→Focused Denovo Growth) (top)
- 13:59, 10 March 2020 (diff | hist) . . (+12) . . 2020 Denovo tutorial 3 with PDBID 4F4P (→Focused Denovo Growth)
- 13:58, 10 March 2020 (diff | hist) . . (+5) . . 2019 Denovo design tutorial 1 with PDB 2BXF (Undo revision 12724 by Stonybrook (talk)) (top)
- 13:56, 10 March 2020 (diff | hist) . . (+44) . . 2020 Denovo tutorial 3 with PDBID 4F4P (→Fragment Librarie)
- 13:53, 10 March 2020 (diff | hist) . . (-5) . . 2019 Denovo design tutorial 1 with PDB 2BXF (→Focused Denovo Growth)
- 13:41, 10 March 2020 (diff | hist) . . (+26) . . 2020 Denovo tutorial 3 with PDBID 4F4P (→Focused Denovo Rescore)
- 13:40, 10 March 2020 (diff | hist) . . (+10) . . 2020 Denovo tutorial 3 with PDBID 4F4P (→Fragment Librarie)
- 13:38, 10 March 2020 (diff | hist) . . (0) . . N File:4f4p fragments.png (top)
- 13:38, 10 March 2020 (diff | hist) . . (+41) . . 2020 Denovo tutorial 3 with PDBID 4F4P (→Fragment Librarie)
- 13:11, 10 March 2020 (diff | hist) . . (+118) . . 2020 Denovo tutorial 3 with PDBID 4F4P (→Focused Denovo Rescore)
- 13:10, 10 March 2020 (diff | hist) . . (+7,082) . . 2020 Denovo tutorial 3 with PDBID 4F4P (→I. Focused De Novo Design with PDB 4F4P)
- 13:03, 10 March 2020 (diff | hist) . . (+6,453) . . 2020 Denovo tutorial 3 with PDBID 4F4P (→Fragment Librarie)
- 11:35, 10 March 2020 (diff | hist) . . (+421) . . 2020 Denovo tutorial 3 with PDBID 4F4P (→Fragment Librarie)
- 11:32, 10 March 2020 (diff | hist) . . (+2,943) . . 2020 Denovo tutorial 3 with PDBID 4F4P (→Fragment Librarie)
- 11:29, 10 March 2020 (diff | hist) . . (+261) . . 2020 Denovo tutorial 3 with PDBID 4F4P (→I. Focused De Novo Design with PDB 4F4P)
- 15:11, 9 March 2020 (diff | hist) . . (+43) . . N 2020 Denovo tutorial 3 with PDBID 4F4P (Created page with "= I. Focused De Novo Design with PDB 4F4P =")
- 14:41, 9 March 2020 (diff | hist) . . (+126) . . N File:Rpmchugh Flex-dock-result transparent.png (Transparent image showing the result of 2GQG's ligand docked back into the receptor, in comparison with the crystal structure.) (top)
- 14:39, 9 March 2020 (diff | hist) . . (-2) . . m 2020 DOCK tutorial 2 with PDBID 2GQG
- 14:35, 9 March 2020 (diff | hist) . . (+17,574) . . 2020 DOCK tutorial 2 with PDBID 2GQG
- 14:35, 9 March 2020 (diff | hist) . . (-17,575) . . 2019 DOCK tutorial 1 with PDBID 2BXF (top)
- 14:11, 9 March 2020 (diff | hist) . . (0) . . File:Rescore.png (Stonybrook uploaded a new version of File:Rescore.png) (top)
- 14:10, 9 March 2020 (diff | hist) . . (0) . . N File:Rescore.png
- 14:10, 9 March 2020 (diff | hist) . . (+178) . . 2020 DOCK tutorial 3 with PDBID 4F4P (→IX Rescoring Docked Molecules) (top)
- 14:04, 9 March 2020 (diff | hist) . . (+35) . . 2020 DOCK tutorial 3 with PDBID 4F4P (→IX Rescoring Docked Molecules)
- 14:01, 9 March 2020 (diff | hist) . . (+7,670) . . 2020 DOCK tutorial 3 with PDBID 4F4P (→IX Rescoring Docked Molecules)
- 13:52, 9 March 2020 (diff | hist) . . (+532) . . 2020 DOCK tutorial 3 with PDBID 4F4P (→IX Rescoring)
- 13:49, 9 March 2020 (diff | hist) . . (+1,353) . . 2020 DOCK tutorial 3 with PDBID 4F4P (→VIII.Cartesian Minimization)
- 13:42, 9 March 2020 (diff | hist) . . (+73) . . 2020 DOCK tutorial 3 with PDBID 4F4P
- 13:38, 9 March 2020 (diff | hist) . . (+117) . . 2020 DOCK tutorial 3 with PDBID 4F4P (→VI. Virtual Screen)
- 00:25, 8 March 2020 (diff | hist) . . (+7,059) . . 2019 DOCK tutorial 1 with PDBID 2BXF
- 00:01, 8 March 2020 (diff | hist) . . (+10,516) . . 2019 DOCK tutorial 1 with PDBID 2BXF
- 12:45, 6 March 2020 (diff | hist) . . (-136) . . 2019 Covalent docking tutorial 1 with PDB 5VKG
- 15:57, 4 March 2020 (diff | hist) . . (+4,414) . . 2020 DOCK tutorial 3 with PDBID 4F4P
- 15:45, 3 March 2020 (diff | hist) . . (-3) . . 2020 DOCK tutorial 4 with PDBID 6UZW (→Virtual Screen)
- 16:34, 2 March 2020 (diff | hist) . . (+5,887) . . 2020 DOCK tutorial 4 with PDBID 6UZW
- 16:11, 2 March 2020 (diff | hist) . . (+1) . . 2020 DOCK tutorial 3 with PDBID 4F4P (→VII. Check Virtual Screen output)
- 16:11, 2 March 2020 (diff | hist) . . (+58) . . 2020 DOCK tutorial 3 with PDBID 4F4P (→VI. Check Virtual Screen output)
- 16:00, 2 March 2020 (diff | hist) . . (+403) . . 2020 DOCK tutorial 3 with PDBID 4F4P (→VI. Check Virtual Screen output)
- 15:49, 2 March 2020 (diff | hist) . . (+60) . . 2020 DOCK tutorial 3 with PDBID 4F4P (→VI. Check Virtual Screen output)
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