Difference between revisions of "DOCK VS Tutorials"

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Disclaimer: The tutorials are written by students learning to use DOCK in a classroom setting. A new dock tutorial is created every year collaboratively by students in the AMS 536 class. All the tutorials follow a similar progression, but are built around different protein-ligand complexes from the PDB.  While effort has been made to ensure the information in the different tutorials are accurate please use at your own risk. They are primarily catalogued here as guides.  For additional information please consult the DOCK 6 manual (https://dock.compbio.ucsf.edu/DOCK_6/index.htm) for details.
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A python script (plot_footprint_single_magnitude.py), which is mentioned in many of the tutorials, is available for download [https://ringo.ams.stonybrook.edu/~rizzo/StonyBrook/downloads/plot_footprint_single_magnitude.py here].
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*[[2024 DOCK tutorial 1 with PDBID 2ITO]]
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*[[2024 DOCK tutorial 2 with PDBID 1NDV]]
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*[[2024 DOCK tutorial 3 with PDBID 1Y0X]]
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*[[2023 DOCK tutorial 1 with PDBID 4S0V]]
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*[[2023 DOCK tutorial 2 with PDBID 3WZE]]
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*[[2023 DOCK tutorial 3 with PDBID 2P16]]
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*[[2022 DOCK tutorial 1 with PDBID 6ME2]]
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*[[2022 DOCK tutorial 2 with PDBID 4ZUD]]
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*[[2022 DOCK tutorial 3 with PDBID 1X70]]
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*[[2021 DOCK tutorial 1 with PDBID 1HW9]]
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*[[2021 DOCK tutorial 2 with PDBID 2ZD1]]
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*[[2021 DOCK tutorial 3 with PDBID 1S19]]
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*[[2021 DOCK tutorial 4 with PDBID 1EFY]]
 
*[[2020 DOCK tutorial 1 with PDBID 3VJK]]
 
*[[2020 DOCK tutorial 1 with PDBID 3VJK]]
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*[[2020 DOCK tutorial 2 with PDBID XXXX]]
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*[[2020 DOCK tutorial 2 with PDBID 2GQG]]
 
*[[2020 DOCK tutorial 3 with PDBID 4F4P]]
 
*[[2020 DOCK tutorial 3 with PDBID 4F4P]]
 
*[[2020 DOCK tutorial 4 with PDBID 6UZW]]
 
*[[2020 DOCK tutorial 4 with PDBID 6UZW]]
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*[[2019 DOCK tutorial 1 with PDBID 2BXF]]
 
*[[2019 DOCK tutorial 1 with PDBID 2BXF]]
 
*[[2019 DOCK tutorial 2 with PDBID 2P16]]
 
*[[2019 DOCK tutorial 2 with PDBID 2P16]]

Latest revision as of 14:54, 31 January 2024

Disclaimer: The tutorials are written by students learning to use DOCK in a classroom setting. A new dock tutorial is created every year collaboratively by students in the AMS 536 class. All the tutorials follow a similar progression, but are built around different protein-ligand complexes from the PDB. While effort has been made to ensure the information in the different tutorials are accurate please use at your own risk. They are primarily catalogued here as guides. For additional information please consult the DOCK 6 manual (https://dock.compbio.ucsf.edu/DOCK_6/index.htm) for details.

A python script (plot_footprint_single_magnitude.py), which is mentioned in many of the tutorials, is available for download here.

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