Difference between revisions of "Rizzo Lab Information and Tutorials"
From Rizzo_Lab
(→DOCK) |
(→DOCK) |
||
| Line 3: | Line 3: | ||
*[http://dock.compbio.ucsf.edu/DOCK_6/dock6_manual.htm Online Users Manual] | *[http://dock.compbio.ucsf.edu/DOCK_6/dock6_manual.htm Online Users Manual] | ||
*[[Tutorials]] | *[[Tutorials]] | ||
| + | *[[Lab SOP]] | ||
*[[Benchmarking Lab SOP and Results]] | *[[Benchmarking Lab SOP and Results]] | ||
*[[Developer's Info]] | *[[Developer's Info]] | ||
Revision as of 18:17, 8 March 2024
Contents
DOCK
Visualization Software
Basic Linux Tools
Molecular Dynamics
GROMACS
Monte Carlo
Analysis Tools
Databases
- PubChem (ligand database)
- NIST (small molecule database)
- ZINC12 Database
- ZINC15 Database
- Families in the Protein Databank
- Automated Family generation from PDB
- Drug-like organic molecules
Conversion between file types
Setting up accounts
