Difference between revisions of "Rizzo Lab Information and Tutorials"
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*[http://dock.compbio.ucsf.edu/DOCK_6/dock6_manual.htm Online Users Manual] | *[http://dock.compbio.ucsf.edu/DOCK_6/dock6_manual.htm Online Users Manual] | ||
*[[Tutorials]] | *[[Tutorials]] | ||
| − | *[[Benchmarking]] | + | *[[Benchmarking Lab SOP & Results]] |
*[[Developer's Info]] | *[[Developer's Info]] | ||
*[[Testset Protocols]] | *[[Testset Protocols]] | ||
Revision as of 14:47, 6 March 2024
Contents
DOCK
Visualization Software
Basic Linux Tools
Molecular Dynamics
GROMACS
Monte Carlo
Analysis Tools
Databases
- PubChem (ligand database)
- NIST (small molecule database)
- ZINC12 Database
- ZINC15 Database
- Families in the Protein Databank
- Automated Family generation from PDB
- Drug-like organic molecules
Conversion between file types
Setting up accounts
