Difference between revisions of "Rizzo Lab Information and Tutorials"
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*[http://dock.compbio.ucsf.edu/DOCK_6/dock6_manual.htm Online Users Manual] | *[http://dock.compbio.ucsf.edu/DOCK_6/dock6_manual.htm Online Users Manual] | ||
*[[Tutorials]] | *[[Tutorials]] | ||
− | *[[Lab SOP]] | + | *[[Lab SOP]] - Includes SOP for: 1) testsets, 2) benchmarking, 3) compound purchase after virtual screen |
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<!-- *[[Testset Protocols]]--> | <!-- *[[Testset Protocols]]--> | ||
*[[Additional DOCK6 Information]] | *[[Additional DOCK6 Information]] |
Revision as of 18:27, 8 March 2024
Contents
DOCK
Visualization Software
Basic Linux Tools
Molecular Dynamics
GROMACS
Monte Carlo
Analysis Tools
Databases
- PubChem (ligand database)
- NIST (small molecule database)
- ZINC12 Database
- ZINC15 Database
- Families in the Protein Databank
- Automated Family generation from PDB
- Drug-like organic molecules
Conversion between file types
Setting up accounts