Difference between revisions of "Rizzo Lab Information and Tutorials"
From Rizzo_Lab
(→GROMACS) |
(→Docking) |
||
Line 45: | Line 45: | ||
|[[DOCK Compilation]] | |[[DOCK Compilation]] | ||
|[[Virtual Screening Protocol on BlueGene (IGF-IR system)]] | |[[Virtual Screening Protocol on BlueGene (IGF-IR system)]] | ||
+ | |[[DOCK Benchmarking]] | ||
|} | |} | ||
Revision as of 12:53, 2 November 2015
Contents
Visualization Software
Basic Linux Tools
Docking
Molecular Dynamics
GROMACS
Monte Carlo
Analysis Tools
Databases
- PubChem (ligand database)
- NIST (small molecule database)
- ZINC (ligand database)
- Families in the Protein Databank
- Automated Families generation from the Protein Databank
- Drug-like organic molecules
BlueGene
Conversion between file types
Setting up accounts
Getting a BNL Account | Activating your Seawulf Account | Rotation students Wiki | Setting up RSA SecureID token |