Difference between revisions of "Rizzo Lab Information and Tutorials"
From Rizzo_Lab
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Revision as of 10:56, 7 May 2018
Contents
Visualization Software
Basic Linux Tools
Docking
De novo Design using DOCK
| NOVA (Navigation and Optimization for Virtual Assembly) | CONGA (CONstruction by Genetic Algorithm) |
Molecular Dynamics
GROMACS
Monte Carlo
Analysis Tools
Databases
- PubChem (ligand database)
- NIST (small molecule database)
- ZINC (ligand database)
- Families in the Protein Databank
- Automated Families generation from the Protein Databank
- Drug-like organic molecules
BlueGene
Conversion between file types
Setting up accounts
| Getting a BNL Account | Activating your Seawulf Account | Rotation students Wiki | Setting up RSA SecureID token |
