Difference between revisions of "Rizzo Lab Information and Tutorials"
From Rizzo_Lab
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* [[NAMD to mol2 ]] | * [[NAMD to mol2 ]] | ||
* [[pdb to mol2]] | * [[pdb to mol2]] | ||
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| + | == Setting up accounts == | ||
| + | {| cellpadding=0 width=90% | ||
| + | | [[Getting a BNL Account]] | ||
| + | | [[Activating your Seawulf Account]] | ||
| + | | [[Rotation students Wiki]] | ||
| + | |} | ||
== Miscellaneous == | == Miscellaneous == | ||
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| [[CVS Commands]] | | [[CVS Commands]] | ||
| [[Ethernet Cables]] | | [[Ethernet Cables]] | ||
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| [[Sequence alignment]] | | [[Sequence alignment]] | ||
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| [[Making images for publication]] | | [[Making images for publication]] | ||
| [[Lab-designed code and programs]] | | [[Lab-designed code and programs]] | ||
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| [[Server Administration]] | | [[Server Administration]] | ||
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Revision as of 11:38, 10 December 2009
Contents
Visualization Software
Basic Linux Tools
DOCKing
| DOCK Tutorials | Testset Protocols | Scoring Functions | Sampling Methods |
| ZINC Database | Installing DOCK |
Molecular Dynamics
| AMBER Tutorials | AMBER tricks |
| NAMD tutorial | NAMD Amber inputs |
| ptraj |
Monte Carlo
Analysis Tools
Databases
- NCI (ligand database)
- NIST (small molecule database)
- ZINC (ligand database)
- Families in the Protein Databank
- Drug-like organic molecules
BlueGene
Conversion between file types
Setting up accounts
| Getting a BNL Account | Activating your Seawulf Account | Rotation students Wiki |
