Difference between revisions of "Rizzo Lab Information and Tutorials"
From Rizzo_Lab
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| [[Semester Checklist]] | | [[Semester Checklist]] | ||
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| + | == Formating Word Documents == | ||
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| + | [[Formating your Thesis]] | ||
== Insurance == | == Insurance == | ||
[[Research Foundation]] | [[Research Foundation]] | ||
Revision as of 16:58, 9 January 2013
Contents
Visualization Software
Basic Linux Tools
Docking
Molecular Dynamics
| AMBER Tutorials | AMBER TI Tutorials | AMBER tricks |
| NAMD tutorial | NAMD Amber inputs | |
| per-residue energy decompositions | nonstandard residues prep | |
| ptraj |
error analysis
Blocked Standard Error of the Mean autocorrelation function
GROMACS
Monte Carlo
Analysis Tools
Databases
- NCI (ligand database)
- NIST (small molecule database)
- ZINC (ligand database)
- Families in the Protein Databank
- Automated Families generation from the Protein Databank
- Drug-like organic molecules
BlueGene
Conversion between file types
Setting up accounts
| Getting a BNL Account | Activating your Seawulf Account | Rotation students Wiki | Setting up RSA SecureID token |
