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- (hist) 2008 Spring [0 bytes]
- (hist) De Novo Design [0 bytes]
- (hist) 2019 Covalent docking tutorial 1 with PDB 2VKG [0 bytes]
- (hist) 2014 [0 bytes]
- (hist) Stonybrook [10 bytes]
- (hist) Outdated Info [13 bytes]
- (hist) 2020 DOCK tutorial 1 with PDBID XXXX [16 bytes]
- (hist) Test Page [17 bytes]
- (hist) Ams.stonybrook.edu [18 bytes]
- (hist) DOCK VS Parameters [21 bytes]
- (hist) Seawulf Programs Needed [22 bytes]
- (hist) Ringo.ams.stonybrook.edu [24 bytes]
- (hist) DOCK VS Utilities [31 bytes]
- (hist) DOCK VS Utilities/Info [31 bytes]
- (hist) AMBER tricks [35 bytes]
- (hist) Coming Soon [36 bytes]
- (hist) 2022 Covalent docking tutorial updated with PDB xxxx [38 bytes]
- (hist) INSPH [47 bytes]
- (hist) Showsph.in [49 bytes]
- (hist) Lab-designed code and programs [55 bytes]
- (hist) De Novo Design (DOCK DN) [62 bytes]
- (hist) Lab SOP [82 bytes]
- (hist) Gnuplot [84 bytes]
- (hist) 2020 AMS-536 Spring [90 bytes]
- (hist) Making images for publication [91 bytes]
- (hist) Showbox.in [99 bytes]
- (hist) DOCK DN Utilities [99 bytes]
- (hist) DOCK DN Utilities/Info [99 bytes]
- (hist) Ghostscript [103 bytes]
- (hist) Small Molecule Evolution (DOCK GA) [104 bytes]
- (hist) DOCK GA Input File(s) [104 bytes]
- (hist) Config [114 bytes]
- (hist) CONGA [115 bytes]
- (hist) CONGA (CONstruction by Genetic Algorithm) [115 bytes]
- (hist) DOCK GA Tutorials [116 bytes]
- (hist) General Dock Utilities [132 bytes]
- (hist) General Dock Utilities/Info [132 bytes]
- (hist) Visiting BNL [140 bytes]
- (hist) Amber to pdb [148 bytes]
- (hist) Rename files in Unix [169 bytes]
- (hist) Make surface [173 bytes]
- (hist) Get Job ids to use for llcancel [181 bytes]
- (hist) Benchmarking Results [190 bytes]
- (hist) DOCK CV Tutorials [194 bytes]
- (hist) Gdb (GNU Debugger) [201 bytes]
- (hist) Archiving old data [203 bytes]
- (hist) Get time for job completion [206 bytes]
- (hist) Common Errors - ctrl M [207 bytes]
- (hist) Pdb to mol2 [209 bytes]
- (hist) Getting a BNL Account [210 bytes]
- (hist) AMBER Lipid Tutorials [232 bytes]
- (hist) Which Unix Distribution? [233 bytes]
- (hist) Legacy Info [233 bytes]
- (hist) Method development [237 bytes]
- (hist) Additional DOCK6 Information [241 bytes]
- (hist) Ethernet Cables [244 bytes]
- (hist) Valgrind [252 bytes]
- (hist) Benchmarking Protocols and Results [261 bytes]
- (hist) Reference.vmd.script [270 bytes]
- (hist) Wiki Editing [271 bytes]
- (hist) Example Input Files [273 bytes]
- (hist) DOCK Denovo [285 bytes]
- (hist) De novo DOCK [285 bytes]
- (hist) DOCK NOVA [285 bytes]
- (hist) NOVA [285 bytes]
- (hist) Influenza [290 bytes]
- (hist) X-Win32 [297 bytes]
- (hist) Benchmarking Protocols and Lab SOPs [299 bytes]
- (hist) Unix find [316 bytes]
- (hist) Sphere Generation [320 bytes]
- (hist) Secure Shell (ssh) [323 bytes]
- (hist) Parameter List/Explanations [327 bytes]
- (hist) Submitting BlueGene Jobs [336 bytes]
- (hist) Drug-like organic molecules [341 bytes]
- (hist) Octave [350 bytes]
- (hist) Example scripts [356 bytes]
- (hist) Advanced Dock Utilities [362 bytes]
- (hist) Ways to remove the first line [364 bytes]
- (hist) BlueGene [368 bytes]
- (hist) Clustering in R [378 bytes]
- (hist) Using convert command unix [379 bytes]
- (hist) SB2011 testset [379 bytes]
- (hist) Advanced Dock Utilities/Information [387 bytes]
- (hist) Restraint.vmd.script [390 bytes]
- (hist) Histograms in R [397 bytes]
- (hist) Compiling Applications for BG/L [402 bytes]
- (hist) NOVA (Navigation and Optimization for Virtual Assembly) [413 bytes]
- (hist) De Novo Design (previously NOVA) [413 bytes]
- (hist) Blocked Standard Error of the Mean [415 bytes]
- (hist) NAMD to mol2 [437 bytes]
- (hist) R - Statistical Computing [444 bytes]
- (hist) Get time estimate for free blocks [445 bytes]
- (hist) Release [480 bytes]
- (hist) General Dock Development Goals [480 bytes]
- (hist) Semester Checklist [491 bytes]
- (hist) Journal Articles from UCSF [534 bytes]
- (hist) DOCK Abbreviations Guide [548 bytes]
- (hist) SDF to mol2 [555 bytes]
- (hist) Amber to mol2 (protein) [579 bytes]
- (hist) Testset Objectives [608 bytes]
- (hist) 2016 AMBER tutorial with Thrombin [614 bytes]
- (hist) Joint Group Meeting 2011 [631 bytes]
- (hist) Test Set Tutorial [643 bytes]
- (hist) Main Page [645 bytes]
- (hist) Footprint Plot Visualization [648 bytes]
- (hist) ZINC Database [653 bytes]
- (hist) ZINC12 Database [653 bytes]
- (hist) Vmd.rmsd.csh [676 bytes]
- (hist) Grid.in [692 bytes]
- (hist) VMD [695 bytes]
- (hist) HIV/AIDS [702 bytes]
- (hist) Tutorials [716 bytes]
- (hist) Installing MSMS for VMD [771 bytes]
- (hist) Making images for publication using vmd [786 bytes]
- (hist) Cancer [801 bytes]
- (hist) NAMD tutorial [833 bytes]
- (hist) Disulfide.txt [842 bytes]
- (hist) Sed - Stream Editor in Unix [852 bytes]
- (hist) Remove waters from trajectories [867 bytes]
- (hist) DOCK GIST Parameters [888 bytes]
- (hist) 2008-2009 LAB [890 bytes]
- (hist) 2008 RCR GROUP MEETING [890 bytes]
- (hist) Optimize Polar Hydrogens [902 bytes]
- (hist) 2010 GRD-500 Spring [902 bytes]
- (hist) Joint Group Meeting 2010 [903 bytes]
- (hist) 2009-2010 GRD-500 Fall-Spring [934 bytes]
- (hist) Joint Group Meeting 2012 [952 bytes]
- (hist) 2020 DOCK tutorial 4 with PDBID XXXX [956 bytes]
- (hist) Research Foundation [973 bytes]
- (hist) Setting up insurance through Research Foundation [973 bytes]
- (hist) Joint Group Meeting 2013 [980 bytes]
- (hist) DOCK CV Development Goals [1,008 bytes]
- (hist) Ptraj [1,041 bytes]
- (hist) Binding Footprint Program [1,080 bytes]
- (hist) DOCK GA Developer Progress [1,083 bytes]
- (hist) Energy Scoring Method in Grid [1,088 bytes]
- (hist) ZINC15 Database [1,092 bytes]
- (hist) DOCK CV Benchmarking [1,161 bytes]
- (hist) AutoDock Vina Benchmark Results [1,180 bytes]
- (hist) Seawulf Cluster Assessment [1,187 bytes]
- (hist) PDFCreator [1,195 bytes]
- (hist) AMBER Tutorials [1,202 bytes]
- (hist) DOCK DN Tutorials [1,225 bytes]
- (hist) DOCK Release Objectives [1,230 bytes]
- (hist) Rizzo Lab General Information for Lab Members [1,286 bytes]
- (hist) DOCK Tutorials [1,294 bytes]
- (hist) Rizzo Lab Downloads [1,296 bytes]
- (hist) Pylab [1,300 bytes]
- (hist) 2010 LAB [1,307 bytes]
- (hist) 2010 RCR GROUP MEETING [1,307 bytes]
- (hist) No t4 step2 min.bash [1,371 bytes]
- (hist) With t4 step2 min.bash [1,373 bytes]
- (hist) Rotation students Wiki [1,400 bytes]
- (hist) LoadLeveler Chain Jobs [1,408 bytes]
- (hist) DOCK Compilation [1,437 bytes]
- (hist) 2018 RCR GROUP MEETING [1,442 bytes]
- (hist) Torsion environment [1,445 bytes]
- (hist) MOE [1,469 bytes]
- (hist) C Shell Scripting [1,502 bytes]
- (hist) How to purchase compounds for Rizzo lab [1,541 bytes]
- (hist) Fourier fit [1,555 bytes]
- (hist) CVS Commands [1,677 bytes]
- (hist) Dell 5110cn Printer [1,700 bytes]
- (hist) 2022 RCR GROUP MEETING [1,737 bytes]
- (hist) Useful Slurm Commands [1,813 bytes]
- (hist) Sampling Methods [1,814 bytes]
- (hist) Ps.m2p [1,823 bytes]
- (hist) Sequence alignment [1,873 bytes]
- (hist) 2009 RCR GROUP MEETING [1,878 bytes]
- (hist) Announcements: Fall 2013 [1,976 bytes]
- (hist) Rsync [1,987 bytes]
- (hist) Rizzo Lab Information and Tutorials [2,009 bytes]
- (hist) Unix [2,049 bytes]
- (hist) DGHYD [2,052 bytes]
- (hist) Integration.pl [2,056 bytes]
- (hist) AMS-532: Lab Rotations/Journal Club Guidelines [2,065 bytes]
- (hist) 200 Codes DoorDash Gift Card Code Generator Unused 2024 Update No Human Verification [2,069 bytes]
- (hist) TIMD integration prep.py [2,100 bytes]
- (hist) AMS-532 Guidlines [2,117 bytes]
- (hist) Cluster compilations [2,141 bytes]
- (hist) Ubq min.mdp [2,155 bytes]
- (hist) Stupid awk tricks [2,188 bytes]
- (hist) Slick awk tricks [2,188 bytes]
- (hist) Families in the Protein Databank [2,247 bytes]
- (hist) Make Unique script usage [2,255 bytes]
- (hist) Rizzo Lab Weekly Group Meetings [2,287 bytes]
- (hist) MPICH [2,313 bytes]
- (hist) Server Administration [2,329 bytes]
- (hist) Apply for NYBlue [2,331 bytes]
- (hist) MATLAB [2,365 bytes]
- (hist) DOCK VS Tutorials [2,378 bytes]
- (hist) Stony Brook Joint Group Meetings in Computational Structural Biology [2,397 bytes]
- (hist) Seawulf Items Needed [2,402 bytes]
- (hist) NAMD Amber inputs [2,405 bytes]
- (hist) Vi [2,466 bytes]
- (hist) Setting up RSA SecureID token [2,470 bytes]
- (hist) No t4 step2 equiprod.bash [2,493 bytes]
- (hist) With t4 step2 equiprod.bash [2,499 bytes]
- (hist) AutoDock4 Benchmark Results [2,506 bytes]
- (hist) Joint Group Meeting 2007-2009 [2,541 bytes]
- (hist) Formating your Thesis [2,557 bytes]
- (hist) Formatting your Thesis [2,557 bytes]
- (hist) Run.java.csh [2,566 bytes]
- (hist) Installing DOCK [2,577 bytes]
- (hist) DOCK Installation [2,577 bytes]
- (hist) 2017 RCR GROUP MEETING [2,639 bytes]
- (hist) Fragment Library Generation [2,653 bytes]
- (hist) TIMD integration.py [2,731 bytes]
- (hist) Scp files from cluster to NYBlue [2,791 bytes]
- (hist) Setup ssh tunnel to NYBlue fen [2,802 bytes]
- (hist) DOCK DN Parameters [3,028 bytes]
- (hist) Parameter List [3,030 bytes]
- (hist) No t4 step1 inputgen.bash [3,120 bytes]
- (hist) No t4 step3 inputgen.bash [3,126 bytes]
- (hist) With t4 step1 inputgen.bash [3,130 bytes]
- (hist) With t4 step3 inputgen.bash [3,132 bytes]
- (hist) Chimera [3,255 bytes]
- (hist) 2019-2020 AMS-532 Fall-Spring [3,260 bytes]
- (hist) 2019 RCR GROUP MEETING [3,400 bytes]
- (hist) DOCK VS Development Goals [3,421 bytes]
- (hist) De novo Benchmarking [3,441 bytes]
- (hist) DOCK DN Benchmarking [3,441 bytes]
- (hist) 04md.in [3,478 bytes]
- (hist) Rigid.in [3,481 bytes]
- (hist) Apply for cluster [3,485 bytes]
- (hist) Other Meetings [3,489 bytes]
- (hist) 3D Analog Library Generation Using Pubchem and Zinc [3,493 bytes]
- (hist) Analog Library - Pubchem & Zinc [3,493 bytes]
- (hist) 01mi.in [3,552 bytes]
- (hist) PBS Queue [3,567 bytes]
- (hist) Compiling GROMACS on Cluster [3,789 bytes]
- (hist) DOCK GA Development Goals [3,840 bytes]
- (hist) TIMD extraction.py [3,888 bytes]
- (hist) Ubq nvt.mdp [3,999 bytes]
- (hist) Automated Families generation from the Protein Databank [4,021 bytes]
- (hist) Automated Family generation from PDB [4,021 bytes]
- (hist) Ubq md.mdp [4,141 bytes]
- (hist) Ubq npt.mdp [4,249 bytes]
- (hist) SLURM [4,319 bytes]
- (hist) DOCK6 POSE Reproduction [4,323 bytes]
- (hist) Flex.in [4,327 bytes]
- (hist) 2012-2013 AMS-532 Fall-Spring [4,340 bytes]
- (hist) RGD [4,424 bytes]
- (hist) Virtual Screening Compound Ordering SOP [4,498 bytes]
- (hist) Restraint04.pdb [4,558 bytes]
- (hist) Restraint01.pdb [4,561 bytes]
- (hist) GRD-500 Integrity in Science [4,589 bytes]
- (hist) CONGA Parameter List [4,724 bytes]
- (hist) DOCK GA Parameter List [4,724 bytes]
- (hist) Pose Reproduction SB2024 V1 DOCK6.10 A [4,829 bytes]