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Showing below up to 250 results in range #51 to #300.

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  1. Common Errors - ctrl M‏‎ (11:37, 25 February 2009)
  2. Amber to pdb‏‎ (11:46, 25 February 2009)
  3. Pdb to mol2‏‎ (11:50, 25 February 2009)
  4. NAMD to mol2‏‎ (11:53, 25 February 2009)
  5. NAMD tutorial‏‎ (12:02, 4 May 2009)
  6. 2008-2009 AMS-532 Fall-Spring‏‎ (22:53, 10 May 2009)
  7. Ethernet Cables‏‎ (13:40, 12 June 2009)
  8. R - Statistical Computing‏‎ (17:50, 19 June 2009)
  9. NAMD Amber inputs‏‎ (11:43, 20 July 2009)
  10. Unix find‏‎ (21:38, 28 July 2009)
  11. Which Unix Distribution?‏‎ (15:36, 8 September 2009)
  12. Drug-like organic molecules‏‎ (20:34, 19 September 2009)
  13. Scp files from cluster to NYBlue‏‎ (13:56, 11 November 2009)
  14. Rotation students Wiki‏‎ (14:02, 8 December 2009)
  15. SDF to mol2‏‎ (11:46, 10 December 2009)
  16. No t4 step2 min.bash‏‎ (11:36, 18 January 2010)
  17. No t4 step2 equiprod.bash‏‎ (11:38, 18 January 2010)
  18. No t4 step3 inputgen.bash‏‎ (11:39, 18 January 2010)
  19. With t4 step1 inputgen.bash‏‎ (11:49, 18 January 2010)
  20. With t4 step2 min.bash‏‎ (11:50, 18 January 2010)
  21. With t4 step2 equiprod.bash‏‎ (11:53, 18 January 2010)
  22. With t4 step3 inputgen.bash‏‎ (11:54, 18 January 2010)
  23. Integration.pl‏‎ (15:08, 19 January 2010)
  24. TIMD integration.py‏‎ (15:10, 19 January 2010)
  25. TIMD integration prep.py‏‎ (15:15, 19 January 2010)
  26. TIMD extraction.py‏‎ (15:16, 19 January 2010)
  27. LoadLeveler Chain Jobs‏‎ (16:41, 25 January 2010)
  28. Amber to mol2 (protein)‏‎ (16:45, 25 January 2010)
  29. Sed - Stream Editor in Unix‏‎ (11:18, 1 February 2010)
  30. Get Job ids to use for llcancel‏‎ (13:09, 5 February 2010)
  31. Pylab‏‎ (14:03, 12 February 2010)
  32. Secure Shell (ssh)‏‎ (12:54, 1 March 2010)
  33. Optimize Polar Hydrogens‏‎ (19:57, 4 March 2010)
  34. Joint Group Meeting 2007-2009‏‎ (11:29, 7 April 2010)
  35. MPICH‏‎ (12:27, 14 April 2010)
  36. Amber on Seawulf (compilation)‏‎ (16:04, 19 April 2010)
  37. No t4 step1 inputgen.bash‏‎ (10:26, 2 June 2010)
  38. AMBER TI Tutorials‏‎ (16:50, 7 June 2010)
  39. Dell 5110cn Printer‏‎ (14:17, 1 July 2010)
  40. Sphere Generation‏‎ (19:34, 24 July 2010)
  41. AMS-532 Guidlines‏‎ (10:09, 28 July 2010)
  42. AMS-532: Lab Rotations/Journal Club Guidelines‏‎ (10:11, 28 July 2010)
  43. 2009-2010 AMS-532 Fall-Spring‏‎ (11:32, 12 August 2010)
  44. 2010 LAB‏‎ (13:31, 13 August 2010)
  45. Cluster compilations‏‎ (15:44, 15 September 2010)
  46. Making images for publication using vmd‏‎ (20:55, 12 October 2010)
  47. Joint Group Meeting 2010‏‎ (12:57, 19 October 2010)
  48. Archiving old data‏‎ (11:50, 29 November 2010)
  49. Past Announcements‏‎ (21:11, 9 December 2010)
  50. SB2011 testset‏‎ (09:53, 21 December 2010)
  51. Setting up RSA SecureID token‏‎ (16:40, 22 December 2010)
  52. 2009 AMBER tutorial with Trpcage‏‎ (10:01, 31 January 2011)
  53. 2008 AMBER tutorial‏‎ (10:01, 31 January 2011)
  54. 2009 DOCK tutorial with neuraminidase‏‎ (10:02, 31 January 2011)
  55. 2008 DOCK tutorial with 1LAH‏‎ (10:02, 31 January 2011)
  56. Blocked Standard Error of the Mean‏‎ (17:41, 7 February 2011)
  57. 2008-2009 LAB‏‎ (15:08, 23 March 2011)
  58. 2009 RCR GROUP MEETING‏‎ (15:21, 23 March 2011)
  59. 2008 RCR GROUP MEETING‏‎ (15:21, 23 March 2011)
  60. 2010 RCR GROUP MEETING‏‎ (15:21, 23 March 2011)
  61. 2011 AMBER Tutorial with Biotin and Streptavidin‏‎ (14:51, 25 March 2011)
  62. VMD‏‎ (07:41, 5 May 2011)
  63. Stupid awk tricks‏‎ (06:31, 6 May 2011)
  64. Fourier fit‏‎ (07:23, 6 May 2011)
  65. Valgrind‏‎ (16:22, 11 May 2011)
  66. 2008 DOCK tutorial with Gleevec‏‎ (09:30, 19 May 2011)
  67. Nonstandard residues prep‏‎ (20:40, 23 May 2011)
  68. Cancer‏‎ (13:31, 24 May 2011)
  69. Influenza‏‎ (13:32, 24 May 2011)
  70. HIV/AIDS‏‎ (13:52, 24 May 2011)
  71. MOE‏‎ (15:59, 15 July 2011)
  72. DOCK Compilation‏‎ (11:47, 18 July 2011)
  73. Genion.mdp‏‎ (14:12, 21 July 2011)
  74. Ubq min.mdp‏‎ (00:10, 22 July 2011)
  75. Ubq md.mdp‏‎ (11:36, 22 July 2011)
  76. Ubq nvt.mdp‏‎ (12:14, 22 July 2011)
  77. Ubq npt.mdp‏‎ (12:14, 22 July 2011)
  78. PBS Queue‏‎ (15:52, 25 July 2011)
  79. Method development‏‎ (08:39, 5 August 2011)
  80. Automated Families generation from the Protein Databank‏‎ (12:35, 12 August 2011)
  81. Ps.m2p‏‎ (10:11, 15 August 2011)
  82. Journal Articles from UCSF‏‎ (16:40, 27 October 2011)
  83. Joint Group Meeting 2012‏‎ (11:38, 15 November 2011)
  84. Joint Group Meeting 2011‏‎ (10:17, 8 December 2011)
  85. 2011 RCR GROUP MEETING‏‎ (11:11, 5 January 2012)
  86. Ghostscript‏‎ (08:19, 9 February 2012)
  87. Semester Checklist‏‎ (06:18, 10 February 2012)
  88. 2010 AMBER Tutorial with Biotin and Streptavidin‏‎ (09:22, 28 February 2012)
  89. MD Simulation: Protein in Water‏‎ (07:22, 29 February 2012)
  90. Stony Brook Joint Group Meetings in Computational Structural Biology‏‎ (11:03, 12 March 2012)
  91. Joint Group Meeting 2013‏‎ (11:04, 12 March 2012)
  92. 2009-2010 GRD-500 Fall-Spring‏‎ (08:32, 24 April 2012)
  93. 2010-2011 GRD-500 Fall-Spring‏‎ (08:34, 24 April 2012)
  94. 2011-2012 GRD-500 Fall-Spring‏‎ (08:35, 24 April 2012)
  95. 2010 GRD-500 Spring‏‎ (08:39, 24 April 2012)
  96. 2010 DOCK tutorial with Streptavidin‏‎ (17:54, 7 May 2012)
  97. 2011 DOCK tutorial with Streptavidin‏‎ (17:55, 7 May 2012)
  98. Virtual Screening Protocol on BlueGene (IGF-IR system)‏‎ (15:06, 25 July 2012)
  99. 2012 DOCK tutorial with Streptavidin‏‎ (11:22, 24 October 2012)
  100. Activating your Seawulf Account‏‎ (11:14, 19 November 2012)
  101. Formating your Thesis‏‎ (22:33, 9 January 2013)
  102. MATLAB‏‎ (17:51, 14 January 2013)
  103. MD Simulation: Protein in Water (Pt. 2)‏‎ (15:58, 15 January 2013)
  104. C Shell Scripting‏‎ (12:17, 30 January 2013)
  105. Rsync‏‎ (20:15, 18 February 2013)
  106. 2012 RCR GROUP MEETING‏‎ (18:27, 8 April 2013)
  107. Compiling GROMACS on Cluster‏‎ (14:59, 31 May 2013)
  108. Xmgrace‏‎ (13:57, 23 July 2013)
  109. AMS-532 Laboratory Rotations and Journal Club in Computational Biology‏‎ (14:18, 5 August 2013)
  110. 2010-2011 AMS-532 Fall-Spring‏‎ (14:22, 5 August 2013)
  111. GRD-500 Integrity in Science‏‎ (15:00, 5 August 2013)
  112. 2011 GRD-500 Spring‏‎ (15:00, 5 August 2013)
  113. 2012 GRD-500 Spring‏‎ (15:03, 5 August 2013)
  114. 2011-2012 AMS-532 Fall-Spring‏‎ (15:08, 5 August 2013)
  115. 2009 AMS-536 Spring‏‎ (16:22, 5 August 2013)
  116. 2010 AMS-536 Spring‏‎ (16:23, 5 August 2013)
  117. 2011 AMS-536 Spring‏‎ (16:23, 5 August 2013)
  118. 2012 AMS-536 Spring‏‎ (16:24, 5 August 2013)
  119. 2008 AMS-535 Fall‏‎ (08:52, 6 August 2013)
  120. 2009 AMS-535 Fall‏‎ (08:57, 6 August 2013)
  121. 2010 AMS-535 Fall‏‎ (08:59, 6 August 2013)
  122. 2011 AMS-535 Fall‏‎ (09:00, 6 August 2013)
  123. 2012 AMS-535 Fall‏‎ (09:03, 6 August 2013)
  124. 2013 AMS-536 Spring‏‎ (09:18, 7 August 2013)
  125. Wiki Editing‏‎ (16:12, 26 August 2013)
  126. Per-residue energy decompositions‏‎ (09:31, 17 September 2013)
  127. Coming Soon‏‎ (16:41, 19 November 2013)
  128. 2013 RCR GROUP MEETING‏‎ (16:06, 6 December 2013)
  129. 2012-2013 AMS-532 Fall-Spring‏‎ (16:11, 23 January 2014)
  130. Server Administration‏‎ (11:09, 7 March 2014)
  131. 2014 AMS-536 Spring‏‎ (14:18, 11 March 2014)
  132. 2012 AMBER Tutorial with Biotin and Streptavidin‏‎ (10:31, 26 March 2014)
  133. Announcements: Fall 2013‏‎ (09:27, 7 April 2014)
  134. 2013 AMS-535 Fall‏‎ (10:57, 7 April 2014)
  135. 2013-2014 AMS-532 Fall-Spring‏‎ (15:25, 9 April 2014)
  136. 2014 AMBER tutorial with HIV Protease‏‎ (20:14, 23 April 2014)
  137. AMBER Lipid Tutorials‏‎ (12:36, 25 August 2014)
  138. 2014 DOCK tutorial with HIV Protease‏‎ (17:05, 17 December 2014)
  139. 2014 RCR GROUP MEETING‏‎ (11:31, 22 December 2014)
  140. 2013 AMBER Tutorial with UMP and OMP‏‎ (15:54, 6 January 2015)
  141. 2014 AMS-535 Fall‏‎ (10:41, 12 January 2015)
  142. 2013 DOCK tutorial with Orotodine Monophosphate Decarboxylase‏‎ (16:26, 14 January 2015)
  143. Energy Scoring Method in Grid‏‎ (13:24, 5 March 2015)
  144. NAMD on Seawulf‏‎ (22:51, 6 March 2015)
  145. 2014-2015 AMS-532 Fall-Spring‏‎ (07:36, 25 March 2015)
  146. 2015 DOCK tutorial with Poly(ADP-ribose) polymerase (PARP)‏‎ (13:16, 25 March 2015)
  147. Getting a BNL Account‏‎ (10:28, 1 May 2015)
  148. Apply for cluster‏‎ (12:53, 1 May 2015)
  149. 2015 AMS-536 Spring‏‎ (13:55, 4 May 2015)
  150. CVS Commands‏‎ (19:02, 10 August 2015)
  151. Main Page‏‎ (11:32, 15 September 2015)
  152. DOCK Benchmarking‏‎ (02:15, 12 November 2015)
  153. 2015 RCR GROUP MEETING‏‎ (09:44, 10 December 2015)
  154. 2016 AMBER tutorial with Thrombin‏‎ (13:16, 6 April 2016)
  155. 2016 AMBER tutorial with Beta Trypsin‏‎ (13:51, 12 May 2016)
  156. 2008 AMS-536 Spring‏‎ (11:44, 1 June 2016)
  157. 2016 RCR GROUP MEETING‏‎ (10:14, 10 August 2016)
  158. 2015-2016 AMS-532 Fall-Spring‏‎ (14:47, 10 August 2016)
  159. 2015 AMS-535 Fall‏‎ (11:42, 12 August 2016)
  160. Seawulf Programs Needed‏‎ (20:21, 12 October 2016)
  161. Seawulf Cluster Assessment‏‎ (14:09, 19 October 2016)
  162. ZINC Database‏‎ (10:18, 27 October 2016)
  163. ZINC12 Database‏‎ (10:28, 27 October 2016)
  164. ZINC15 Database‏‎ (17:08, 22 November 2016)
  165. DOCK Denovo Run‏‎ (15:34, 30 November 2016)
  166. 2016 AMS-535 Fall‏‎ (13:23, 8 December 2016)
  167. DOCK Denovo Refinement‏‎ (13:15, 18 January 2017)
  168. 2016 DOCK tutorial with Beta Trypsin‏‎ (16:53, 30 January 2017)
  169. 2017 Dock tutorial‏‎ (16:47, 1 February 2017)
  170. 2018‏‎ (16:47, 1 February 2017)
  171. 2017a DOCK tutorial‏‎ (15:56, 6 February 2017)
  172. 2017 DOCK tutorial 2 with PDB 3GPL NEW‏‎ (16:59, 8 March 2017)
  173. 2017 DOCK tutorial 1 with PDB 4QMZ NEW‏‎ (17:10, 8 March 2017)
  174. Seawulf Items Needed‏‎ (13:36, 9 March 2017)
  175. 2017 Denovo design tutorial with PDB 1BJU‏‎ (16:09, 22 March 2017)
  176. 2017 AMS-536 Spring‏‎ (15:21, 10 April 2017)
  177. RGD‏‎ (11:34, 28 April 2017)
  178. Joe and Brian de novo stuff‏‎ (12:37, 20 June 2017)
  179. 2017 AMBER tutorial with 4qmz‏‎ (11:18, 5 July 2017)
  180. 2016-2017 AMS-532 Fall-Spring‏‎ (09:28, 11 July 2017)
  181. DOCK Denovo‏‎ (11:36, 3 October 2017)
  182. 2017 RCR GROUP MEETING‏‎ (13:28, 19 December 2017)
  183. De novo DOCK‏‎ (12:44, 17 January 2018)
  184. CONGA‏‎ (09:57, 29 January 2018)
  185. DOCK NOVA‏‎ (13:52, 16 February 2018)
  186. NOVA‏‎ (13:55, 16 February 2018)
  187. CONGA (CONstruction by Genetic Algorithm)‏‎ (13:59, 16 February 2018)
  188. Fragment Library Generation‏‎ (15:00, 19 February 2018)
  189. 2018 AMS-536 Spring‏‎ (14:24, 26 March 2018)
  190. 2018 AMBER tutorial with 1c87‏‎ (15:26, 4 April 2018)
  191. De novo Benchmarking‏‎ (08:54, 26 April 2018)
  192. 3D Analog Library Generation Using Pubchem and Zinc‏‎ (09:36, 22 May 2018)
  193. 2018 RCR GROUP MEETING‏‎ (12:48, 9 July 2018)
  194. NOVA (Navigation and Optimization for Virtual Assembly)‏‎ (11:13, 25 July 2018)
  195. 2017-2018 AMS-532 Fall-Spring‏‎ (10:12, 25 August 2018)
  196. CONGA Parameter List‏‎ (14:11, 28 August 2018)
  197. Example of an Input file‏‎ (13:46, 6 September 2018)
  198. De Novo Design (previously NOVA)‏‎ (15:27, 6 September 2018)
  199. Make Unique script usage‏‎ (15:35, 6 September 2018)
  200. Footprint Plot Visualization‏‎ (11:14, 7 September 2018)
  201. Example of an CONGA Input file‏‎ (10:27, 10 September 2018)
  202. De Novo Design‏‎ (10:30, 10 September 2018)
  203. Gdb (GNU Debugger)‏‎ (09:15, 19 October 2018)
  204. 2018 DOCK tutorial 2 with PDBID 1C87‏‎ (14:12, 12 November 2018)
  205. Release‏‎ (09:48, 3 December 2018)
  206. 2018 AMS-535 Fall‏‎ (20:54, 3 December 2018)
  207. Virtual Screening Protocol‏‎ (11:10, 4 December 2018)
  208. Parameter List‏‎ (10:43, 25 January 2019)
  209. DOCK Tutorials‏‎ (14:26, 30 January 2019)
  210. Outdated Info‏‎ (10:54, 4 February 2019)
  211. Slick awk tricks‏‎ (11:01, 4 February 2019)
  212. Setting up insurance through Research Foundation‏‎ (11:10, 4 February 2019)
  213. Formatting your Thesis‏‎ (11:10, 4 February 2019)
  214. DOCK GA Parameter List‏‎ (11:18, 4 February 2019)
  215. BlueGene‏‎ (11:20, 4 February 2019)
  216. Analog Library - Pubchem & Zinc‏‎ (11:21, 4 February 2019)
  217. Automated Family generation from PDB‏‎ (11:22, 4 February 2019)
  218. Installing DOCK‏‎ (11:30, 4 February 2019)
  219. DOCK GA Developer Progress‏‎ (11:31, 4 February 2019)
  220. DOCK Installation‏‎ (11:31, 4 February 2019)
  221. De novo Developer Progress‏‎ (11:53, 4 February 2019)
  222. Benchmarking‏‎ (12:05, 4 February 2019)
  223. DOCK DN Benchmarking‏‎ (12:06, 4 February 2019)
  224. Testset Protocols‏‎ (12:12, 4 February 2019)
  225. General Dock Development Goals‏‎ (10:29, 5 February 2019)
  226. Small Molecule Evolution (DOCK GA)‏‎ (10:34, 5 February 2019)
  227. Example Input Files‏‎ (10:36, 5 February 2019)
  228. DOCK DN Input File(s)‏‎ (10:37, 5 February 2019)
  229. DOCK GA Input File(s)‏‎ (10:37, 5 February 2019)
  230. De Novo Design (DOCK DN)‏‎ (10:38, 5 February 2019)
  231. Advanced Dock Utilities‏‎ (10:41, 5 February 2019)
  232. DOCK DN Utilities‏‎ (10:42, 5 February 2019)
  233. DOCK VS Utilities‏‎ (10:43, 5 February 2019)
  234. DOCK VS Parameters‏‎ (10:45, 5 February 2019)
  235. Legacy Info‏‎ (10:48, 5 February 2019)
  236. General Dock Utilities‏‎ (10:55, 5 February 2019)
  237. DOCK VS Utilities/Info‏‎ (10:57, 5 February 2019)
  238. DOCK DN Utilities/Info‏‎ (10:58, 5 February 2019)
  239. General Dock Utilities/Info‏‎ (10:58, 5 February 2019)
  240. Advanced Dock Utilities/Information‏‎ (10:58, 5 February 2019)
  241. Chimera‏‎ (09:48, 6 February 2019)
  242. DGHYD‏‎ (15:47, 6 February 2019)
  243. Developer's Info‏‎ (10:26, 7 February 2019)
  244. Rizzo Lab Weekly Group Meetings‏‎ (10:13, 11 February 2019)
  245. 2016 AMS-536 Spring‏‎ (14:42, 19 February 2019)
  246. 2018 AMBER tutorial with 2nnq‏‎ (20:39, 2 April 2019)
  247. 2019 AMBER tutorial with PDBID 2BXF‏‎ (15:14, 19 April 2019)
  248. DOCK CV Development Goals‏‎ (16:01, 14 May 2019)
  249. DOCK CV Input File(s)‏‎ (16:16, 14 May 2019)
  250. Parameter List/Explanations‏‎ (10:05, 17 May 2019)

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