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Showing below up to 250 results in range #51 to #300.

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  1. Common Errors - ctrl M‏‎ (12:37, 25 February 2009)
  2. Amber to pdb‏‎ (12:46, 25 February 2009)
  3. Pdb to mol2‏‎ (12:50, 25 February 2009)
  4. NAMD to mol2‏‎ (12:53, 25 February 2009)
  5. NAMD tutorial‏‎ (13:02, 4 May 2009)
  6. 2008-2009 AMS-532 Fall-Spring‏‎ (23:53, 10 May 2009)
  7. Ethernet Cables‏‎ (14:40, 12 June 2009)
  8. R - Statistical Computing‏‎ (18:50, 19 June 2009)
  9. NAMD Amber inputs‏‎ (12:43, 20 July 2009)
  10. Unix find‏‎ (22:38, 28 July 2009)
  11. Which Unix Distribution?‏‎ (16:36, 8 September 2009)
  12. Drug-like organic molecules‏‎ (21:34, 19 September 2009)
  13. Scp files from cluster to NYBlue‏‎ (14:56, 11 November 2009)
  14. Rotation students Wiki‏‎ (15:02, 8 December 2009)
  15. SDF to mol2‏‎ (12:46, 10 December 2009)
  16. No t4 step2 min.bash‏‎ (12:36, 18 January 2010)
  17. No t4 step2 equiprod.bash‏‎ (12:38, 18 January 2010)
  18. No t4 step3 inputgen.bash‏‎ (12:39, 18 January 2010)
  19. With t4 step1 inputgen.bash‏‎ (12:49, 18 January 2010)
  20. With t4 step2 min.bash‏‎ (12:50, 18 January 2010)
  21. With t4 step2 equiprod.bash‏‎ (12:53, 18 January 2010)
  22. With t4 step3 inputgen.bash‏‎ (12:54, 18 January 2010)
  23. Integration.pl‏‎ (16:08, 19 January 2010)
  24. TIMD integration.py‏‎ (16:10, 19 January 2010)
  25. TIMD integration prep.py‏‎ (16:15, 19 January 2010)
  26. TIMD extraction.py‏‎ (16:16, 19 January 2010)
  27. LoadLeveler Chain Jobs‏‎ (17:41, 25 January 2010)
  28. Amber to mol2 (protein)‏‎ (17:45, 25 January 2010)
  29. Sed - Stream Editor in Unix‏‎ (12:18, 1 February 2010)
  30. Get Job ids to use for llcancel‏‎ (14:09, 5 February 2010)
  31. Pylab‏‎ (15:03, 12 February 2010)
  32. Secure Shell (ssh)‏‎ (13:54, 1 March 2010)
  33. Optimize Polar Hydrogens‏‎ (20:57, 4 March 2010)
  34. Joint Group Meeting 2007-2009‏‎ (12:29, 7 April 2010)
  35. MPICH‏‎ (13:27, 14 April 2010)
  36. Amber on Seawulf (compilation)‏‎ (17:04, 19 April 2010)
  37. No t4 step1 inputgen.bash‏‎ (11:26, 2 June 2010)
  38. AMBER TI Tutorials‏‎ (17:50, 7 June 2010)
  39. Dell 5110cn Printer‏‎ (15:17, 1 July 2010)
  40. Sphere Generation‏‎ (20:34, 24 July 2010)
  41. AMS-532 Guidlines‏‎ (11:09, 28 July 2010)
  42. AMS-532: Lab Rotations/Journal Club Guidelines‏‎ (11:11, 28 July 2010)
  43. 2009-2010 AMS-532 Fall-Spring‏‎ (12:32, 12 August 2010)
  44. 2010 LAB‏‎ (14:31, 13 August 2010)
  45. Cluster compilations‏‎ (16:44, 15 September 2010)
  46. Making images for publication using vmd‏‎ (21:55, 12 October 2010)
  47. Joint Group Meeting 2010‏‎ (13:57, 19 October 2010)
  48. Archiving old data‏‎ (12:50, 29 November 2010)
  49. Past Announcements‏‎ (22:11, 9 December 2010)
  50. SB2011 testset‏‎ (10:53, 21 December 2010)
  51. Setting up RSA SecureID token‏‎ (17:40, 22 December 2010)
  52. 2009 AMBER tutorial with Trpcage‏‎ (11:01, 31 January 2011)
  53. 2008 AMBER tutorial‏‎ (11:01, 31 January 2011)
  54. 2009 DOCK tutorial with neuraminidase‏‎ (11:02, 31 January 2011)
  55. 2008 DOCK tutorial with 1LAH‏‎ (11:02, 31 January 2011)
  56. Blocked Standard Error of the Mean‏‎ (18:41, 7 February 2011)
  57. 2008-2009 LAB‏‎ (16:08, 23 March 2011)
  58. 2009 RCR GROUP MEETING‏‎ (16:21, 23 March 2011)
  59. 2008 RCR GROUP MEETING‏‎ (16:21, 23 March 2011)
  60. 2010 RCR GROUP MEETING‏‎ (16:21, 23 March 2011)
  61. 2011 AMBER Tutorial with Biotin and Streptavidin‏‎ (15:51, 25 March 2011)
  62. VMD‏‎ (08:41, 5 May 2011)
  63. Stupid awk tricks‏‎ (07:31, 6 May 2011)
  64. Fourier fit‏‎ (08:23, 6 May 2011)
  65. Valgrind‏‎ (17:22, 11 May 2011)
  66. 2008 DOCK tutorial with Gleevec‏‎ (10:30, 19 May 2011)
  67. Nonstandard residues prep‏‎ (21:40, 23 May 2011)
  68. Cancer‏‎ (14:31, 24 May 2011)
  69. Influenza‏‎ (14:32, 24 May 2011)
  70. HIV/AIDS‏‎ (14:52, 24 May 2011)
  71. MOE‏‎ (16:59, 15 July 2011)
  72. DOCK Compilation‏‎ (12:47, 18 July 2011)
  73. Genion.mdp‏‎ (15:12, 21 July 2011)
  74. Ubq min.mdp‏‎ (01:10, 22 July 2011)
  75. Ubq md.mdp‏‎ (12:36, 22 July 2011)
  76. Ubq nvt.mdp‏‎ (13:14, 22 July 2011)
  77. Ubq npt.mdp‏‎ (13:14, 22 July 2011)
  78. PBS Queue‏‎ (16:52, 25 July 2011)
  79. Method development‏‎ (09:39, 5 August 2011)
  80. Automated Families generation from the Protein Databank‏‎ (13:35, 12 August 2011)
  81. Ps.m2p‏‎ (11:11, 15 August 2011)
  82. Journal Articles from UCSF‏‎ (17:40, 27 October 2011)
  83. Joint Group Meeting 2012‏‎ (12:38, 15 November 2011)
  84. Joint Group Meeting 2011‏‎ (11:17, 8 December 2011)
  85. 2011 RCR GROUP MEETING‏‎ (12:11, 5 January 2012)
  86. Ghostscript‏‎ (09:19, 9 February 2012)
  87. Semester Checklist‏‎ (07:18, 10 February 2012)
  88. 2010 AMBER Tutorial with Biotin and Streptavidin‏‎ (10:22, 28 February 2012)
  89. MD Simulation: Protein in Water‏‎ (08:22, 29 February 2012)
  90. Stony Brook Joint Group Meetings in Computational Structural Biology‏‎ (12:03, 12 March 2012)
  91. Joint Group Meeting 2013‏‎ (12:04, 12 March 2012)
  92. 2009-2010 GRD-500 Fall-Spring‏‎ (09:32, 24 April 2012)
  93. 2010-2011 GRD-500 Fall-Spring‏‎ (09:34, 24 April 2012)
  94. 2011-2012 GRD-500 Fall-Spring‏‎ (09:35, 24 April 2012)
  95. 2010 GRD-500 Spring‏‎ (09:39, 24 April 2012)
  96. 2010 DOCK tutorial with Streptavidin‏‎ (18:54, 7 May 2012)
  97. 2011 DOCK tutorial with Streptavidin‏‎ (18:55, 7 May 2012)
  98. Virtual Screening Protocol on BlueGene (IGF-IR system)‏‎ (16:06, 25 July 2012)
  99. 2012 DOCK tutorial with Streptavidin‏‎ (12:22, 24 October 2012)
  100. Activating your Seawulf Account‏‎ (12:14, 19 November 2012)
  101. Formating your Thesis‏‎ (23:33, 9 January 2013)
  102. MATLAB‏‎ (18:51, 14 January 2013)
  103. MD Simulation: Protein in Water (Pt. 2)‏‎ (16:58, 15 January 2013)
  104. C Shell Scripting‏‎ (13:17, 30 January 2013)
  105. Rsync‏‎ (21:15, 18 February 2013)
  106. 2012 RCR GROUP MEETING‏‎ (19:27, 8 April 2013)
  107. Compiling GROMACS on Cluster‏‎ (15:59, 31 May 2013)
  108. Xmgrace‏‎ (14:57, 23 July 2013)
  109. AMS-532 Laboratory Rotations and Journal Club in Computational Biology‏‎ (15:18, 5 August 2013)
  110. 2010-2011 AMS-532 Fall-Spring‏‎ (15:22, 5 August 2013)
  111. GRD-500 Integrity in Science‏‎ (16:00, 5 August 2013)
  112. 2011 GRD-500 Spring‏‎ (16:00, 5 August 2013)
  113. 2012 GRD-500 Spring‏‎ (16:03, 5 August 2013)
  114. 2011-2012 AMS-532 Fall-Spring‏‎ (16:08, 5 August 2013)
  115. 2009 AMS-536 Spring‏‎ (17:22, 5 August 2013)
  116. 2010 AMS-536 Spring‏‎ (17:23, 5 August 2013)
  117. 2011 AMS-536 Spring‏‎ (17:23, 5 August 2013)
  118. 2012 AMS-536 Spring‏‎ (17:24, 5 August 2013)
  119. 2008 AMS-535 Fall‏‎ (09:52, 6 August 2013)
  120. 2009 AMS-535 Fall‏‎ (09:57, 6 August 2013)
  121. 2010 AMS-535 Fall‏‎ (09:59, 6 August 2013)
  122. 2011 AMS-535 Fall‏‎ (10:00, 6 August 2013)
  123. 2012 AMS-535 Fall‏‎ (10:03, 6 August 2013)
  124. 2013 AMS-536 Spring‏‎ (10:18, 7 August 2013)
  125. Wiki Editing‏‎ (17:12, 26 August 2013)
  126. Per-residue energy decompositions‏‎ (10:31, 17 September 2013)
  127. Coming Soon‏‎ (17:41, 19 November 2013)
  128. 2013 RCR GROUP MEETING‏‎ (17:06, 6 December 2013)
  129. 2012-2013 AMS-532 Fall-Spring‏‎ (17:11, 23 January 2014)
  130. Server Administration‏‎ (12:09, 7 March 2014)
  131. 2014 AMS-536 Spring‏‎ (15:18, 11 March 2014)
  132. 2012 AMBER Tutorial with Biotin and Streptavidin‏‎ (11:31, 26 March 2014)
  133. Announcements: Fall 2013‏‎ (10:27, 7 April 2014)
  134. 2013 AMS-535 Fall‏‎ (11:57, 7 April 2014)
  135. 2013-2014 AMS-532 Fall-Spring‏‎ (16:25, 9 April 2014)
  136. 2014 AMBER tutorial with HIV Protease‏‎ (21:14, 23 April 2014)
  137. AMBER Lipid Tutorials‏‎ (13:36, 25 August 2014)
  138. 2014 DOCK tutorial with HIV Protease‏‎ (18:05, 17 December 2014)
  139. 2014 RCR GROUP MEETING‏‎ (12:31, 22 December 2014)
  140. 2013 AMBER Tutorial with UMP and OMP‏‎ (16:54, 6 January 2015)
  141. 2013 DOCK tutorial with Orotodine Monophosphate Decarboxylase‏‎ (17:26, 14 January 2015)
  142. Energy Scoring Method in Grid‏‎ (14:24, 5 March 2015)
  143. NAMD on Seawulf‏‎ (23:51, 6 March 2015)
  144. 2014-2015 AMS-532 Fall-Spring‏‎ (08:36, 25 March 2015)
  145. 2015 DOCK tutorial with Poly(ADP-ribose) polymerase (PARP)‏‎ (14:16, 25 March 2015)
  146. Getting a BNL Account‏‎ (11:28, 1 May 2015)
  147. Apply for cluster‏‎ (13:53, 1 May 2015)
  148. 2015 AMS-536 Spring‏‎ (14:55, 4 May 2015)
  149. CVS Commands‏‎ (20:02, 10 August 2015)
  150. DOCK Benchmarking‏‎ (03:15, 12 November 2015)
  151. 2015 RCR GROUP MEETING‏‎ (10:44, 10 December 2015)
  152. 2016 AMBER tutorial with Thrombin‏‎ (14:16, 6 April 2016)
  153. 2016 AMBER tutorial with Beta Trypsin‏‎ (14:51, 12 May 2016)
  154. 2008 AMS-536 Spring‏‎ (12:44, 1 June 2016)
  155. 2016 RCR GROUP MEETING‏‎ (11:14, 10 August 2016)
  156. 2015-2016 AMS-532 Fall-Spring‏‎ (15:47, 10 August 2016)
  157. 2015 AMS-535 Fall‏‎ (12:42, 12 August 2016)
  158. Seawulf Programs Needed‏‎ (21:21, 12 October 2016)
  159. Seawulf Cluster Assessment‏‎ (15:09, 19 October 2016)
  160. ZINC Database‏‎ (11:18, 27 October 2016)
  161. ZINC12 Database‏‎ (11:28, 27 October 2016)
  162. ZINC15 Database‏‎ (18:08, 22 November 2016)
  163. DOCK Denovo Run‏‎ (16:34, 30 November 2016)
  164. 2016 AMS-535 Fall‏‎ (14:23, 8 December 2016)
  165. DOCK Denovo Refinement‏‎ (14:15, 18 January 2017)
  166. 2016 DOCK tutorial with Beta Trypsin‏‎ (17:53, 30 January 2017)
  167. 2018‏‎ (17:47, 1 February 2017)
  168. 2017 Dock tutorial‏‎ (17:47, 1 February 2017)
  169. 2017a DOCK tutorial‏‎ (16:56, 6 February 2017)
  170. 2017 DOCK tutorial 2 with PDB 3GPL NEW‏‎ (17:59, 8 March 2017)
  171. 2017 DOCK tutorial 1 with PDB 4QMZ NEW‏‎ (18:10, 8 March 2017)
  172. Seawulf Items Needed‏‎ (14:36, 9 March 2017)
  173. 2017 Denovo design tutorial with PDB 1BJU‏‎ (17:09, 22 March 2017)
  174. 2017 AMS-536 Spring‏‎ (16:21, 10 April 2017)
  175. RGD‏‎ (12:34, 28 April 2017)
  176. Joe and Brian de novo stuff‏‎ (13:37, 20 June 2017)
  177. 2017 AMBER tutorial with 4qmz‏‎ (12:18, 5 July 2017)
  178. 2016-2017 AMS-532 Fall-Spring‏‎ (10:28, 11 July 2017)
  179. DOCK Denovo‏‎ (12:36, 3 October 2017)
  180. 2017 RCR GROUP MEETING‏‎ (14:28, 19 December 2017)
  181. De novo DOCK‏‎ (13:44, 17 January 2018)
  182. CONGA‏‎ (10:57, 29 January 2018)
  183. DOCK NOVA‏‎ (14:52, 16 February 2018)
  184. NOVA‏‎ (14:55, 16 February 2018)
  185. CONGA (CONstruction by Genetic Algorithm)‏‎ (14:59, 16 February 2018)
  186. Fragment Library Generation‏‎ (16:00, 19 February 2018)
  187. 2018 AMS-536 Spring‏‎ (15:24, 26 March 2018)
  188. 2018 AMBER tutorial with 1c87‏‎ (16:26, 4 April 2018)
  189. De novo Benchmarking‏‎ (09:54, 26 April 2018)
  190. 3D Analog Library Generation Using Pubchem and Zinc‏‎ (10:36, 22 May 2018)
  191. 2018 RCR GROUP MEETING‏‎ (13:48, 9 July 2018)
  192. NOVA (Navigation and Optimization for Virtual Assembly)‏‎ (12:13, 25 July 2018)
  193. 2017-2018 AMS-532 Fall-Spring‏‎ (11:12, 25 August 2018)
  194. CONGA Parameter List‏‎ (15:11, 28 August 2018)
  195. Example of an Input file‏‎ (14:46, 6 September 2018)
  196. De Novo Design (previously NOVA)‏‎ (16:27, 6 September 2018)
  197. Make Unique script usage‏‎ (16:35, 6 September 2018)
  198. Footprint Plot Visualization‏‎ (12:14, 7 September 2018)
  199. Example of an CONGA Input file‏‎ (11:27, 10 September 2018)
  200. De Novo Design‏‎ (11:30, 10 September 2018)
  201. Gdb (GNU Debugger)‏‎ (10:15, 19 October 2018)
  202. 2018 DOCK tutorial 2 with PDBID 1C87‏‎ (15:12, 12 November 2018)
  203. Release‏‎ (10:48, 3 December 2018)
  204. Virtual Screening Protocol‏‎ (12:10, 4 December 2018)
  205. Parameter List‏‎ (11:43, 25 January 2019)
  206. DOCK Tutorials‏‎ (15:26, 30 January 2019)
  207. Outdated Info‏‎ (11:54, 4 February 2019)
  208. Slick awk tricks‏‎ (12:01, 4 February 2019)
  209. Setting up insurance through Research Foundation‏‎ (12:10, 4 February 2019)
  210. Formatting your Thesis‏‎ (12:10, 4 February 2019)
  211. DOCK GA Parameter List‏‎ (12:18, 4 February 2019)
  212. BlueGene‏‎ (12:20, 4 February 2019)
  213. Analog Library - Pubchem & Zinc‏‎ (12:21, 4 February 2019)
  214. Automated Family generation from PDB‏‎ (12:22, 4 February 2019)
  215. Installing DOCK‏‎ (12:30, 4 February 2019)
  216. DOCK GA Developer Progress‏‎ (12:31, 4 February 2019)
  217. DOCK Installation‏‎ (12:31, 4 February 2019)
  218. De novo Developer Progress‏‎ (12:53, 4 February 2019)
  219. DOCK DN Benchmarking‏‎ (13:06, 4 February 2019)
  220. Testset Protocols‏‎ (13:12, 4 February 2019)
  221. General Dock Development Goals‏‎ (11:29, 5 February 2019)
  222. Small Molecule Evolution (DOCK GA)‏‎ (11:34, 5 February 2019)
  223. Example Input Files‏‎ (11:36, 5 February 2019)
  224. DOCK DN Input File(s)‏‎ (11:37, 5 February 2019)
  225. DOCK GA Input File(s)‏‎ (11:37, 5 February 2019)
  226. De Novo Design (DOCK DN)‏‎ (11:38, 5 February 2019)
  227. Advanced Dock Utilities‏‎ (11:41, 5 February 2019)
  228. DOCK DN Utilities‏‎ (11:42, 5 February 2019)
  229. DOCK VS Utilities‏‎ (11:43, 5 February 2019)
  230. DOCK VS Parameters‏‎ (11:45, 5 February 2019)
  231. General Dock Utilities‏‎ (11:55, 5 February 2019)
  232. DOCK VS Utilities/Info‏‎ (11:57, 5 February 2019)
  233. DOCK DN Utilities/Info‏‎ (11:58, 5 February 2019)
  234. General Dock Utilities/Info‏‎ (11:58, 5 February 2019)
  235. Advanced Dock Utilities/Information‏‎ (11:58, 5 February 2019)
  236. Chimera‏‎ (10:48, 6 February 2019)
  237. 2016 AMS-536 Spring‏‎ (15:42, 19 February 2019)
  238. 2018 AMBER tutorial with 2nnq‏‎ (21:39, 2 April 2019)
  239. 2019 AMBER tutorial with PDBID 2BXF‏‎ (16:14, 19 April 2019)
  240. DOCK CV Development Goals‏‎ (17:01, 14 May 2019)
  241. DOCK CV Input File(s)‏‎ (17:16, 14 May 2019)
  242. Parameter List/Explanations‏‎ (11:05, 17 May 2019)
  243. DOCK GIST Parameters‏‎ (10:35, 21 May 2019)
  244. Example of an Single Molecule Evolution Input file‏‎ (16:25, 17 June 2019)
  245. Example of an Ensemble Evolution Input file‏‎ (16:29, 17 June 2019)
  246. 2015 AMBER tutorial with PARP‏‎ (12:53, 26 June 2019)
  247. 2019 DOCK tutorial 2 with PDBID 2P16‏‎ (12:35, 12 December 2019)
  248. 2018 DOCK tutorial 1 with PDBID 2NNQ‏‎ (12:46, 12 December 2019)
  249. 2019 Denovo design tutorial 2 with PDB 2P16‏‎ (12:46, 17 December 2019)
  250. 2019 Denovo design tutorial 3 with PDB 3JQZ‏‎ (12:49, 17 December 2019)

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