Articles with the most revisions

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Showing below up to 250 results in range #101 to #350.

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  1. 2025 Denovo tutorial 2 with PDBID 1XMU‏‎ (36 revisions)
  2. 2012 AMS-535 Fall‏‎ (36 revisions)
  3. 2022 AMS-535 Fall‏‎ (36 revisions)
  4. Virtual Screening Protocol on BlueGene (IGF-IR system)‏‎ (35 revisions)
  5. 2021-2022 AMS-532 Fall-Spring‏‎ (35 revisions)
  6. ZINC15 Database‏‎ (34 revisions)
  7. 2010 AMS-536 Spring‏‎ (34 revisions)
  8. 2015 AMS-535 Fall‏‎ (33 revisions)
  9. 2024 AMBER tutorial 2 with PDBID 1NDV‏‎ (32 revisions)
  10. 2014 RCR GROUP MEETING‏‎ (32 revisions)
  11. SB2010‏‎ (32 revisions)
  12. Amber on Seawulf (compilation)‏‎ (32 revisions)
  13. 2019 Covalent docking tutorial 1 with PDB 2VKG‏‎ (31 revisions)
  14. 2014 AMS-535 Fall‏‎ (31 revisions)
  15. 2013 RCR GROUP MEETING‏‎ (30 revisions)
  16. 2024-2025 AMS-532 Fall-Spring‏‎ (30 revisions)
  17. DOCK VS Tutorials‏‎ (30 revisions)
  18. 2019-2020 AMS-532 Fall-Spring‏‎ (29 revisions)
  19. Tutorials‏‎ (29 revisions)
  20. 2017 AMS-535 Fall‏‎ (29 revisions)
  21. 2016-2017 AMS-532 Fall-Spring‏‎ (29 revisions)
  22. 2022 AMS-536 Spring‏‎ (28 revisions)
  23. 2011 DOCK tutorial with Streptavidin‏‎ (28 revisions)
  24. Parameter List‏‎ (28 revisions)
  25. Analysis Tools Repository‏‎ (27 revisions)
  26. 2014 AMS-536 Spring‏‎ (27 revisions)
  27. AMBER Tutorials‏‎ (27 revisions)
  28. 2021 Denovo tutorial 3 with PDBID 1S19‏‎ (27 revisions)
  29. 2019 Denovo design tutorial 3 with PDB 3JQZ‏‎ (27 revisions)
  30. 2013 AMS-536 Spring‏‎ (27 revisions)
  31. 2011 AMS-536 Spring‏‎ (26 revisions)
  32. 2019 AMS-535 Fall‏‎ (26 revisions)
  33. 2020 AMS-536 Spring (original syllabus)‏‎ (26 revisions)
  34. 2016 AMS-536 Spring‏‎ (26 revisions)
  35. Stony Brook Joint Group Meetings in Computational Structural Biology‏‎ (26 revisions)
  36. 2019 Denovo design tutorial 2 with PDB 2P16‏‎ (26 revisions)
  37. 2019 Denovo design tutorial 1 with PDB 2BXF‏‎ (25 revisions)
  38. 2024 AMS-536 Spring‏‎ (25 revisions)
  39. 2022 Denovo tutorial 2 with PDBID 4ZUD‏‎ (24 revisions)
  40. 2018 Denovo design tutorial 1 with PDB 2NNQ‏‎ (24 revisions)
  41. 2023 AMS-536 Spring‏‎ (24 revisions)
  42. 2019 AMBER tutorial with PDBID 2BXF‏‎ (23 revisions)
  43. 2017-2018 AMS-532 Fall-Spring‏‎ (23 revisions)
  44. 2021 AMBER tutorial 1 with PDBID 1HW9‏‎ (22 revisions)
  45. 2018-2019 AMS-532 Fall-Spring‏‎ (22 revisions)
  46. 2012 AMS-536 Spring‏‎ (22 revisions)
  47. 2017 AMBER tutorial with 4qmz‏‎ (22 revisions)
  48. 2023 AMBER tutorial 2 with PDBID 3WZE‏‎ (22 revisions)
  49. Main Page‏‎ (22 revisions)
  50. How to purchase compounds for Rizzo lab‏‎ (21 revisions)
  51. Virtual Screening Protocol‏‎ (21 revisions)
  52. 2020-2021 AMS-532 Fall-Spring‏‎ (21 revisions)
  53. 2020 Denovo tutorial 4 with PDBID 6UZW‏‎ (21 revisions)
  54. 2017 Dock tutorial‏‎ (20 revisions)
  55. NAMD Amber inputs‏‎ (20 revisions)
  56. 2024 DOCK GA tutorial 1 with 1NDV‏‎ (20 revisions)
  57. 2022 AMBER tutorial 1 with PDBID 6ME2‏‎ (20 revisions)
  58. Make Unique script usage‏‎ (20 revisions)
  59. 2024 Denovo tutorial 1 with PDBID 2ITO‏‎ (19 revisions)
  60. 2019 AMS-536 Spring‏‎ (19 revisions)
  61. 2023-2024 AMS-532 Fall-Spring‏‎ (19 revisions)
  62. DOCK6 POSE Reproduction‏‎ (19 revisions)
  63. SB2021.v1‏‎ (19 revisions)
  64. Seawulf Items Needed‏‎ (18 revisions)
  65. 2022 Denovo tutorial 3 with PDBID 1X70‏‎ (18 revisions)
  66. 2022-2023 AMS-532 Fall-Spring‏‎ (18 revisions)
  67. Development Goals Archive‏‎ (18 revisions)
  68. 2014-2015 AMS-532 Fall-Spring‏‎ (17 revisions)
  69. 2023 Denovo tutorial 3 with PDBID 2P16‏‎ (17 revisions)
  70. 2022 RCR GROUP MEETING‏‎ (17 revisions)
  71. DGHYD‏‎ (17 revisions)
  72. 2016 RCR GROUP MEETING‏‎ (16 revisions)
  73. Formating your Thesis‏‎ (16 revisions)
  74. 2016 AMBER tutorial with Thrombin‏‎ (15 revisions)
  75. Benchmarking Protocols and Lab SOPs‏‎ (15 revisions)
  76. 2025 DOCK GA tutorial 2 with 1XMU‏‎ (15 revisions)
  77. DOCK DN Tutorials‏‎ (15 revisions)
  78. Seawulf Cluster Assessment‏‎ (14 revisions)
  79. 2022 Denovo tutorial 1 with PDBID 6ME2‏‎ (14 revisions)
  80. 2020 DOCK tutorial 2 with PDBID 2GQG‏‎ (14 revisions)
  81. 2020 DOCK tutorial 2 with PDBID XXXX‏‎ (14 revisions)
  82. 2018 AMS-536 Spring‏‎ (14 revisions)
  83. 2020 Denovo tutorial 1 with PDBID 3VJK‏‎ (14 revisions)
  84. 2021 Denovo tutorial 4 with PDBID 1EFY‏‎ (14 revisions)
  85. Energy Scoring Method in Grid‏‎ (13 revisions)
  86. 2012-2013 AMS-532 Fall-Spring‏‎ (13 revisions)
  87. DOCK Release Objectives‏‎ (13 revisions)
  88. 2018 AMBER tutorial with 1c87‏‎ (13 revisions)
  89. Per-residue energy decompositions‏‎ (13 revisions)
  90. BASH scripting‏‎ (13 revisions)
  91. Useful Slurm Commands‏‎ (13 revisions)
  92. CONGA Parameter List‏‎ (13 revisions)
  93. 2020 Denovo tutorial 3 with PDBID 4F4P‏‎ (13 revisions)
  94. 2024 AMBER tutorial 3 with PDBID 1Y0X‏‎ (12 revisions)
  95. De novo Benchmarking‏‎ (12 revisions)
  96. Server Administration‏‎ (12 revisions)
  97. 2018 Denovo design tutorial 2 with PDB 1C87‏‎ (12 revisions)
  98. Rizzo Lab General Information for Lab Members‏‎ (12 revisions)
  99. 2018 RCR GROUP MEETING‏‎ (12 revisions)
  100. 2017 Denovo refine tutorial with PDB 1BJU‏‎ (11 revisions)
  101. Benchmarking Protocols and Results‏‎ (11 revisions)
  102. Stupid awk tricks‏‎ (11 revisions)
  103. 3D Analog Library Generation Using Pubchem and Zinc‏‎ (11 revisions)
  104. Activating your Seawulf Account‏‎ (11 revisions)
  105. Joint Group Meeting 2010‏‎ (11 revisions)
  106. Joint Group Meeting 2011‏‎ (11 revisions)
  107. Nonstandard residues prep‏‎ (11 revisions)
  108. Apply for cluster‏‎ (10 revisions)
  109. PBS Queue‏‎ (10 revisions)
  110. Benchmarking Results‏‎ (10 revisions)
  111. 2019 DOCK GA tutorial 1 with 2NNQ‏‎ (10 revisions)
  112. Compiling GROMACS on Cluster‏‎ (10 revisions)
  113. 2010 LAB‏‎ (10 revisions)
  114. Chimera‏‎ (9 revisions)
  115. GRD-500 Integrity in Science‏‎ (9 revisions)
  116. DOCK GA Tutorials‏‎ (9 revisions)
  117. MATLAB‏‎ (9 revisions)
  118. Past Announcements‏‎ (9 revisions)
  119. AutoDock Vina Pose Reproduction Tutorial‏‎ (9 revisions)
  120. Unix‏‎ (9 revisions)
  121. DOCK Denovo‏‎ (9 revisions)
  122. MPICH‏‎ (9 revisions)
  123. 2025 AMS-536 Spring‏‎ (8 revisions)
  124. Small Molecule Evolution (DOCK GA)‏‎ (8 revisions)
  125. Release‏‎ (8 revisions)
  126. Torsion environment‏‎ (8 revisions)
  127. AutoDock4 Benchmark Results‏‎ (8 revisions)
  128. DOCK VS Benchmarking‏‎ (8 revisions)
  129. DOCK Denovo Refinement‏‎ (8 revisions)
  130. DOCK Benchmarking‏‎ (8 revisions)
  131. DOCK CV Benchmarking‏‎ (8 revisions)
  132. Testset Objectives‏‎ (7 revisions)
  133. Legacy Info‏‎ (7 revisions)
  134. 2024 AMBER tutorial 1 with PDBID 2ITO‏‎ (7 revisions)
  135. 2008 DOCK tutorial with Gleevec‏‎ (7 revisions)
  136. MD Simulation: Protein in Water (Pt. 2)‏‎ (7 revisions)
  137. MOE‏‎ (7 revisions)
  138. 2022 AMBER tutorial 3 with PDBID 1X70‏‎ (7 revisions)
  139. Fragment Library Generation‏‎ (7 revisions)
  140. Example of an Input file‏‎ (6 revisions)
  141. De Novo Design (DOCK DN)‏‎ (6 revisions)
  142. Automated Families generation from the Protein Databank‏‎ (6 revisions)
  143. 2017 AMS-536 Spring‏‎ (6 revisions)
  144. Dell 5110cn Printer‏‎ (6 revisions)
  145. 2024 Denovo tutorial 3 with PDBID 1Y0X‏‎ (5 revisions)
  146. 2009 RCR GROUP MEETING‏‎ (5 revisions)
  147. Scp files from cluster to NYBlue‏‎ (5 revisions)
  148. Vi‏‎ (5 revisions)
  149. Xmgrace‏‎ (5 revisions)
  150. Cluster compilations‏‎ (5 revisions)
  151. DOCK GA Parameters‏‎ (5 revisions)
  152. 2008-2009 LAB‏‎ (5 revisions)
  153. DOCK GIST Parameters‏‎ (5 revisions)
  154. 2008 AMS-535 Fall‏‎ (5 revisions)
  155. Installing DOCK‏‎ (5 revisions)
  156. Rsync‏‎ (5 revisions)
  157. NOVA (Navigation and Optimization for Virtual Assembly)‏‎ (5 revisions)
  158. Joint Group Meeting 2007-2009‏‎ (5 revisions)
  159. 2017 Denovo design tutorial 1 with PDB 1BJU‏‎ (5 revisions)
  160. Joint Group Meeting 2013‏‎ (5 revisions)
  161. VMD‏‎ (5 revisions)
  162. C Shell Scripting‏‎ (5 revisions)
  163. 2009 DOCK tutorial with neuraminidase‏‎ (4 revisions)
  164. DOCK CV Tutorials‏‎ (4 revisions)
  165. LoadLeveler Chain Jobs‏‎ (4 revisions)
  166. 2008 AMS-536 Spring‏‎ (4 revisions)
  167. Semester Checklist‏‎ (4 revisions)
  168. 2008 RCR GROUP MEETING‏‎ (4 revisions)
  169. SB2011 testset‏‎ (4 revisions)
  170. 2009-2010 GRD-500 Fall-Spring‏‎ (4 revisions)
  171. 2010 RCR GROUP MEETING‏‎ (4 revisions)
  172. DOCK Abbreviations Guide‏‎ (4 revisions)
  173. HIV/AIDS‏‎ (4 revisions)
  174. SLURM‏‎ (4 revisions)
  175. RGD‏‎ (3 revisions)
  176. AMS-532 Guidlines‏‎ (3 revisions)
  177. R - Statistical Computing‏‎ (3 revisions)
  178. DOCK CV Input File(s)‏‎ (3 revisions)
  179. Virtual Screening Compound Ordering SOP‏‎ (3 revisions)
  180. 2008 AMBER tutorial‏‎ (3 revisions)
  181. Example of an CONGA Input file‏‎ (3 revisions)
  182. General Dock Utilities‏‎ (3 revisions)
  183. 2018‏‎ (3 revisions)
  184. Rotation students Wiki‏‎ (3 revisions)
  185. AutoDock Vina Benchmark Results‏‎ (3 revisions)
  186. 2008 DOCK tutorial with 1LAH‏‎ (3 revisions)
  187. Example of an Single Molecule Evolution Input file‏‎ (3 revisions)
  188. Additional DOCK6 Information‏‎ (3 revisions)
  189. BlueGene‏‎ (3 revisions)
  190. 2021 Denovo tutorial 2 with PDBID 2ZD1‏‎ (3 revisions)
  191. Advanced Dock Utilities/Information‏‎ (3 revisions)
  192. 2012 GRD-500 Spring‏‎ (3 revisions)
  193. Unix find‏‎ (3 revisions)
  194. Setting up RSA SecureID token‏‎ (3 revisions)
  195. 2009 AMBER tutorial with Trpcage‏‎ (3 revisions)
  196. Joint Group Meeting 2012‏‎ (3 revisions)
  197. SDF to mol2‏‎ (3 revisions)
  198. Fourier fit‏‎ (3 revisions)
  199. DOCK CV Development Goals‏‎ (2 revisions)
  200. Valgrind‏‎ (2 revisions)
  201. 2017 Denovo refinement tutorial with PDB 1BJU‏‎ (2 revisions)
  202. Making images for publication using vmd‏‎ (2 revisions)
  203. Testset Protocols‏‎ (2 revisions)
  204. 2014‏‎ (2 revisions)
  205. Ethernet Cables‏‎ (2 revisions)
  206. Gdb (GNU Debugger)‏‎ (2 revisions)
  207. Method development‏‎ (2 revisions)
  208. Sphere Generation‏‎ (2 revisions)
  209. DOCK Compilation‏‎ (2 revisions)
  210. 2011 GRD-500 Spring‏‎ (2 revisions)
  211. Lab SOP‏‎ (2 revisions)
  212. 2017a DOCK tutorial‏‎ (2 revisions)
  213. ZINC Database‏‎ (2 revisions)
  214. 2010-2011 GRD-500 Fall-Spring‏‎ (2 revisions)
  215. Example of an Ensemble Evolution Input file‏‎ (2 revisions)
  216. NAMD on Seawulf‏‎ (2 revisions)
  217. Ubq min.mdp‏‎ (2 revisions)
  218. De Novo Design‏‎ (2 revisions)
  219. Genion.mdp‏‎ (2 revisions)
  220. Parameter List/Explanations‏‎ (2 revisions)
  221. Ubq npt.mdp‏‎ (2 revisions)
  222. Sed - Stream Editor in Unix‏‎ (2 revisions)
  223. DOCK DN Parameters‏‎ (2 revisions)
  224. Get Job ids to use for llcancel‏‎ (2 revisions)
  225. Ubq nvt.mdp‏‎ (2 revisions)
  226. DOCK DN Utilities‏‎ (2 revisions)
  227. Getting a BNL Account‏‎ (2 revisions)
  228. No t4 step1 inputgen.bash‏‎ (2 revisions)
  229. CONGA‏‎ (2 revisions)
  230. Footprint Plot Visualization‏‎ (2 revisions)
  231. Ps.m2p‏‎ (2 revisions)
  232. Amber to mol2 (protein)‏‎ (2 revisions)
  233. CVS Commands‏‎ (2 revisions)
  234. Pylab‏‎ (2 revisions)
  235. AMS-532: Lab Rotations/Journal Club Guidelines‏‎ (2 revisions)
  236. 2009 AMS-536 Spring‏‎ (2 revisions)
  237. Test Set Tutorial V1‏‎ (1 revisions - redirect page)
  238. Sampling Methods‏‎ (1 revisions)
  239. VMD tutorial‏‎ (1 revisions - redirect page)
  240. Simple Protein in Water MD‏‎ (1 revisions - redirect page)
  241. With t4 step3 inputgen.bash‏‎ (1 revisions)
  242. Benchmarking Lab SOP and Results‏‎ (1 revisions - redirect page)
  243. Cancer‏‎ (1 revisions)
  244. 2008-2007 AMS-532 Fall-Spring‏‎ (1 revisions - redirect page)
  245. DOCK GA Input File(s)‏‎ (1 revisions)
  246. DOCK tutorial‏‎ (1 revisions - redirect page)
  247. Drug-like organic molecules‏‎ (1 revisions)
  248. Free Energy of Hydration Test-set‏‎ (1 revisions - redirect page)
  249. Histograms in R‏‎ (1 revisions)
  250. Lab-designed code and programs‏‎ (1 revisions)

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