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Showing below up to 250 results in range #101 to #350.

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  1. 2021 Denovo tutorial 3 with PDBID 1S19‏‎ (27 revisions)
  2. 2019 Denovo design tutorial 3 with PDB 3JQZ‏‎ (27 revisions)
  3. Analysis Tools Repository‏‎ (27 revisions)
  4. 2013 AMS-536 Spring‏‎ (27 revisions)
  5. 2011 AMS-536 Spring‏‎ (26 revisions)
  6. 2019 AMS-535 Fall‏‎ (26 revisions)
  7. 2020 AMS-536 Spring (original syllabus)‏‎ (26 revisions)
  8. 2016 AMS-536 Spring‏‎ (26 revisions)
  9. 2019 Denovo design tutorial 2 with PDB 2P16‏‎ (26 revisions)
  10. Stony Brook Joint Group Meetings in Computational Structural Biology‏‎ (26 revisions)
  11. 2019 Denovo design tutorial 1 with PDB 2BXF‏‎ (25 revisions)
  12. 2022 Denovo tutorial 2 with PDBID 4ZUD‏‎ (24 revisions)
  13. 2018 Denovo design tutorial 1 with PDB 2NNQ‏‎ (24 revisions)
  14. 2017-2018 AMS-532 Fall-Spring‏‎ (23 revisions)
  15. AMBER Tutorials‏‎ (23 revisions)
  16. 2019 AMBER tutorial with PDBID 2BXF‏‎ (23 revisions)
  17. 2018-2019 AMS-532 Fall-Spring‏‎ (22 revisions)
  18. 2017 AMBER tutorial with 4qmz‏‎ (22 revisions)
  19. 2012 AMS-536 Spring‏‎ (22 revisions)
  20. 2021 AMBER tutorial 1 with PDBID 1HW9‏‎ (22 revisions)
  21. Virtual Screening Protocol‏‎ (21 revisions)
  22. 2020-2021 AMS-532 Fall-Spring‏‎ (21 revisions)
  23. 2020 Denovo tutorial 4 with PDBID 6UZW‏‎ (21 revisions)
  24. 2017 Dock tutorial‏‎ (20 revisions)
  25. NAMD Amber inputs‏‎ (20 revisions)
  26. 2022 AMBER tutorial 1 with PDBID 6ME2‏‎ (20 revisions)
  27. Make Unique script usage‏‎ (20 revisions)
  28. 2019 AMS-536 Spring‏‎ (19 revisions)
  29. Main Page‏‎ (19 revisions)
  30. DOCK6 POSE Reproduction‏‎ (19 revisions)
  31. How to purchase compounds for Rizzo lab‏‎ (19 revisions)
  32. 2022 Denovo tutorial 3 with PDBID 1X70‏‎ (18 revisions)
  33. SB2021.v1‏‎ (18 revisions)
  34. Seawulf Items Needed‏‎ (18 revisions)
  35. 2014-2015 AMS-532 Fall-Spring‏‎ (17 revisions)
  36. 2016 RCR GROUP MEETING‏‎ (16 revisions)
  37. Formating your Thesis‏‎ (16 revisions)
  38. DGHYD‏‎ (16 revisions)
  39. DOCK VS Tutorials‏‎ (15 revisions)
  40. 2016 AMBER tutorial with Thrombin‏‎ (15 revisions)
  41. 2022 Denovo tutorial 1 with PDBID 6ME2‏‎ (14 revisions)
  42. 2020 DOCK tutorial 2 with PDBID 2GQG‏‎ (14 revisions)
  43. 2020 DOCK tutorial 2 with PDBID XXXX‏‎ (14 revisions)
  44. 2018 AMS-536 Spring‏‎ (14 revisions)
  45. 2020 Denovo tutorial 1 with PDBID 3VJK‏‎ (14 revisions)
  46. 2021 Denovo tutorial 4 with PDBID 1EFY‏‎ (14 revisions)
  47. Seawulf Cluster Assessment‏‎ (14 revisions)
  48. CONGA Parameter List‏‎ (13 revisions)
  49. 2012-2013 AMS-532 Fall-Spring‏‎ (13 revisions)
  50. 2018 AMBER tutorial with 1c87‏‎ (13 revisions)
  51. BASH scripting‏‎ (13 revisions)
  52. Per-residue energy decompositions‏‎ (13 revisions)
  53. 2020 Denovo tutorial 3 with PDBID 4F4P‏‎ (13 revisions)
  54. Energy Scoring Method in Grid‏‎ (13 revisions)
  55. Server Administration‏‎ (12 revisions)
  56. De novo Benchmarking‏‎ (12 revisions)
  57. 2018 Denovo design tutorial 2 with PDB 1C87‏‎ (12 revisions)
  58. 2018 RCR GROUP MEETING‏‎ (12 revisions)
  59. 3D Analog Library Generation Using Pubchem and Zinc‏‎ (11 revisions)
  60. Activating your Seawulf Account‏‎ (11 revisions)
  61. Tutorials‏‎ (11 revisions)
  62. DOCK Release Objectives‏‎ (11 revisions)
  63. Joint Group Meeting 2010‏‎ (11 revisions)
  64. Joint Group Meeting 2011‏‎ (11 revisions)
  65. Nonstandard residues prep‏‎ (11 revisions)
  66. 2017 Denovo refine tutorial with PDB 1BJU‏‎ (11 revisions)
  67. Stupid awk tricks‏‎ (11 revisions)
  68. PBS Queue‏‎ (10 revisions)
  69. Ligand Enrichment Tutorial‏‎ (10 revisions)
  70. 2010 LAB‏‎ (10 revisions)
  71. Compiling GROMACS on Cluster‏‎ (10 revisions)
  72. Apply for cluster‏‎ (10 revisions)
  73. AutoDock Vina Pose Reproduction Tutorial‏‎ (9 revisions)
  74. MATLAB‏‎ (9 revisions)
  75. Chimera‏‎ (9 revisions)
  76. Past Announcements‏‎ (9 revisions)
  77. MPICH‏‎ (9 revisions)
  78. Unix‏‎ (9 revisions)
  79. DOCK Denovo‏‎ (9 revisions)
  80. GRD-500 Integrity in Science‏‎ (9 revisions)
  81. DOCK CV Benchmarking‏‎ (8 revisions)
  82. Small Molecule Evolution (DOCK GA)‏‎ (8 revisions)
  83. DOCK Denovo Refinement‏‎ (8 revisions)
  84. Release‏‎ (8 revisions)
  85. AutoDock4 Benchmark Results‏‎ (8 revisions)
  86. DOCK Benchmarking‏‎ (8 revisions)
  87. 2019 DOCK GA tutorial 1 with 2NNQ‏‎ (7 revisions)
  88. DOCK GA Tutorials‏‎ (7 revisions)
  89. MD Simulation: Protein in Water (Pt. 2)‏‎ (7 revisions)
  90. MOE‏‎ (7 revisions)
  91. 2008 DOCK tutorial with Gleevec‏‎ (7 revisions)
  92. 2022 AMBER tutorial 3 with PDBID 1X70‏‎ (7 revisions)
  93. DOCK VS Benchmarking‏‎ (7 revisions)
  94. Fragment Library Generation‏‎ (7 revisions)
  95. Legacy Info‏‎ (6 revisions)
  96. Automated Families generation from the Protein Databank‏‎ (6 revisions)
  97. Example of an Input file‏‎ (6 revisions)
  98. De Novo Design (DOCK DN)‏‎ (6 revisions)
  99. 2017 AMS-536 Spring‏‎ (6 revisions)
  100. DOCK DN Tutorials‏‎ (6 revisions)
  101. Dell 5110cn Printer‏‎ (6 revisions)
  102. VMD‏‎ (5 revisions)
  103. 2009 RCR GROUP MEETING‏‎ (5 revisions)
  104. Rsync‏‎ (5 revisions)
  105. Xmgrace‏‎ (5 revisions)
  106. C Shell Scripting‏‎ (5 revisions)
  107. Vi‏‎ (5 revisions)
  108. DOCK GA Parameters‏‎ (5 revisions)
  109. 2008-2009 LAB‏‎ (5 revisions)
  110. Installing DOCK‏‎ (5 revisions)
  111. Cluster compilations‏‎ (5 revisions)
  112. DOCK GIST Parameters‏‎ (5 revisions)
  113. 2008 AMS-535 Fall‏‎ (5 revisions)
  114. NOVA (Navigation and Optimization for Virtual Assembly)‏‎ (5 revisions)
  115. Joint Group Meeting 2007-2009‏‎ (5 revisions)
  116. 2017 Denovo design tutorial 1 with PDB 1BJU‏‎ (5 revisions)
  117. Joint Group Meeting 2013‏‎ (5 revisions)
  118. Scp files from cluster to NYBlue‏‎ (5 revisions)
  119. 2009 DOCK tutorial with neuraminidase‏‎ (4 revisions)
  120. Semester Checklist‏‎ (4 revisions)
  121. LoadLeveler Chain Jobs‏‎ (4 revisions)
  122. SB2011 testset‏‎ (4 revisions)
  123. 2008 AMS-536 Spring‏‎ (4 revisions)
  124. SLURM‏‎ (4 revisions)
  125. 2008 RCR GROUP MEETING‏‎ (4 revisions)
  126. 2010 RCR GROUP MEETING‏‎ (4 revisions)
  127. 2009-2010 GRD-500 Fall-Spring‏‎ (4 revisions)
  128. HIV/AIDS‏‎ (4 revisions)
  129. DOCK Abbreviations Guide‏‎ (4 revisions)
  130. Rotation students Wiki‏‎ (3 revisions)
  131. AutoDock Vina Benchmark Results‏‎ (3 revisions)
  132. Example of an CONGA Input file‏‎ (3 revisions)
  133. General Dock Utilities‏‎ (3 revisions)
  134. DOCK CV Input File(s)‏‎ (3 revisions)
  135. 2018‏‎ (3 revisions)
  136. DOCK CV Tutorials‏‎ (3 revisions)
  137. 2008 AMBER tutorial‏‎ (3 revisions)
  138. Example of an Single Molecule Evolution Input file‏‎ (3 revisions)
  139. Setting up RSA SecureID token‏‎ (3 revisions)
  140. Advanced Dock Utilities/Information‏‎ (3 revisions)
  141. 2021 Denovo tutorial 2 with PDBID 2ZD1‏‎ (3 revisions)
  142. 2008 DOCK tutorial with 1LAH‏‎ (3 revisions)
  143. SDF to mol2‏‎ (3 revisions)
  144. 2012 GRD-500 Spring‏‎ (3 revisions)
  145. Benchmarking‏‎ (3 revisions)
  146. Joint Group Meeting 2012‏‎ (3 revisions)
  147. Fourier fit‏‎ (3 revisions)
  148. RGD‏‎ (3 revisions)
  149. AMS-532 Guidlines‏‎ (3 revisions)
  150. BlueGene‏‎ (3 revisions)
  151. 2009 AMBER tutorial with Trpcage‏‎ (3 revisions)
  152. R - Statistical Computing‏‎ (3 revisions)
  153. Unix find‏‎ (3 revisions)
  154. Ethernet Cables‏‎ (2 revisions)
  155. Gdb (GNU Debugger)‏‎ (2 revisions)
  156. Method development‏‎ (2 revisions)
  157. Sed - Stream Editor in Unix‏‎ (2 revisions)
  158. CVS Commands‏‎ (2 revisions)
  159. DOCK CV Development Goals‏‎ (2 revisions)
  160. 2011 GRD-500 Spring‏‎ (2 revisions)
  161. 2017a DOCK tutorial‏‎ (2 revisions)
  162. Valgrind‏‎ (2 revisions)
  163. Example of an Ensemble Evolution Input file‏‎ (2 revisions)
  164. NAMD on Seawulf‏‎ (2 revisions)
  165. 2010-2011 GRD-500 Fall-Spring‏‎ (2 revisions)
  166. Genion.mdp‏‎ (2 revisions)
  167. Parameter List/Explanations‏‎ (2 revisions)
  168. DOCK Compilation‏‎ (2 revisions)
  169. Get Job ids to use for llcancel‏‎ (2 revisions)
  170. Testset Protocols‏‎ (2 revisions)
  171. ZINC Database‏‎ (2 revisions)
  172. De Novo Design‏‎ (2 revisions)
  173. Amber to mol2 (protein)‏‎ (2 revisions)
  174. Virtual Screening SOP‏‎ (2 revisions)
  175. Getting a BNL Account‏‎ (2 revisions)
  176. No t4 step1 inputgen.bash‏‎ (2 revisions)
  177. Ps.m2p‏‎ (2 revisions)
  178. Ubq min.mdp‏‎ (2 revisions)
  179. DOCK DN Parameters‏‎ (2 revisions)
  180. Footprint Plot Visualization‏‎ (2 revisions)
  181. Ubq npt.mdp‏‎ (2 revisions)
  182. Ubq nvt.mdp‏‎ (2 revisions)
  183. DOCK DN Utilities‏‎ (2 revisions)
  184. Pylab‏‎ (2 revisions)
  185. AMS-532: Lab Rotations/Journal Club Guidelines‏‎ (2 revisions)
  186. Developer's Info‏‎ (2 revisions)
  187. Sphere Generation‏‎ (2 revisions)
  188. CONGA‏‎ (2 revisions)
  189. 2009 AMS-536 Spring‏‎ (2 revisions)
  190. Making images for publication using vmd‏‎ (2 revisions)
  191. 2017 Denovo refinement tutorial with PDB 1BJU‏‎ (2 revisions)
  192. INSPH‏‎ (1 revisions)
  193. Lab-specific Tutorials‏‎ (1 revisions - redirect page)
  194. Outdated Info‏‎ (1 revisions)
  195. Remove waters from trajectories‏‎ (1 revisions)
  196. Robert C. Rizzo Research Group‏‎ (1 revisions - redirect page)
  197. Secure Shell (ssh)‏‎ (1 revisions)
  198. Submitting BleuGene Jobs‏‎ (1 revisions - redirect page)
  199. With t4 step3 inputgen.bash‏‎ (1 revisions)
  200. DOCK VS Utilities/Info‏‎ (1 revisions)
  201. 2008-2007 AMS-532 Fall-Spring‏‎ (1 revisions - redirect page)
  202. Example Input Files‏‎ (1 revisions)
  203. General Dock Development Goals‏‎ (1 revisions)
  204. Influenza‏‎ (1 revisions)
  205. Min.mdp‏‎ (1 revisions - redirect page)
  206. Rename files in Unix‏‎ (1 revisions)
  207. Submitting BlueGene Jobs‏‎ (1 revisions)
  208. VMD tutorial‏‎ (1 revisions - redirect page)
  209. X-Win32‏‎ (1 revisions)
  210. DOCK GA Input File(s)‏‎ (1 revisions)
  211. DOCK tutorial‏‎ (1 revisions - redirect page)
  212. 2008-2009‏‎ (1 revisions - redirect page)
  213. 2010‏‎ (1 revisions - redirect page)
  214. Input for md‏‎ (1 revisions - redirect page)
  215. PDFCreator‏‎ (1 revisions)
  216. Research Foundation‏‎ (1 revisions)
  217. TIMD extraction.py‏‎ (1 revisions)
  218. AMS 532: Lab Rotations/Journal Club Guidelines‏‎ (1 revisions - redirect page)
  219. DOCK GA Parameter List‏‎ (1 revisions)
  220. DOCK tutorial with 1LAH‏‎ (1 revisions - redirect page)
  221. 2008-2009 AMS-532 Fall-Spring‏‎ (1 revisions)
  222. General Dock Utilities/Info‏‎ (1 revisions)
  223. Input for min‏‎ (1 revisions - redirect page)
  224. 2016 DOCK tutorial with Thrombin‏‎ (1 revisions - redirect page)
  225. Restraint.vmd.script‏‎ (1 revisions)
  226. 2020 DOCK tutorial 1 with PDBID XXXX‏‎ (1 revisions)
  227. Run.java.csh‏‎ (1 revisions)
  228. Sequence alignment‏‎ (1 revisions)
  229. TIMD integration.py‏‎ (1 revisions)
  230. ZINC12 Database‏‎ (1 revisions)
  231. Cancer‏‎ (1 revisions)
  232. DOCK tutorial with Gleevec‏‎ (1 revisions - redirect page)
  233. NAMD to mol2‏‎ (1 revisions)
  234. Restraint01.pdb‏‎ (1 revisions)
  235. AMBER Lipid Tutorials‏‎ (1 revisions)
  236. TIMD integration prep.py‏‎ (1 revisions)
  237. Advanced Dock Utilities‏‎ (1 revisions)
  238. Vi tutorial‏‎ (1 revisions - redirect page)
  239. Automated Family generation from PDB‏‎ (1 revisions)
  240. DOCK tutorial with neuraminidase‏‎ (1 revisions - redirect page)
  241. Installing MSMS for VMD‏‎ (1 revisions)
  242. NAMD tutorial‏‎ (1 revisions)
  243. Restraint04.pdb‏‎ (1 revisions)
  244. DOCK DN Benchmarking‏‎ (1 revisions)
  245. Example scripts‏‎ (1 revisions)
  246. Get time estimate for free blocks‏‎ (1 revisions)
  247. Integration.pl‏‎ (1 revisions)
  248. NOVA‏‎ (1 revisions)
  249. Pdb to mol2‏‎ (1 revisions)
  250. Rigid.in‏‎ (1 revisions)

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