Long pages
Showing below up to 250 results in range #1 to #250.
View (previous 250) (next 250) (20 | 50 | 100 | 250 | 500).
- (hist) 2025 DOCK tutorial 1 with PDBID 1O86 [98,462 bytes]
- (hist) 2023 DOCK tutorial 2 with PDBID 3WZE [75,627 bytes]
- (hist) 2023 DOCK tutorial 1 with PDBID 4S0V [74,394 bytes]
- (hist) 2024 DOCK tutorial 1 with PDBID 2ITO [73,138 bytes]
- (hist) 2020 DOCK tutorial 1 with PDBID 3VJK [69,212 bytes]
- (hist) 2022 DOCK tutorial 1 with PDBID 6ME2 [67,764 bytes]
- (hist) 2021 DOCK tutorial 1 with PDBID 1HW9 [67,733 bytes]
- (hist) 2017 DOCK tutorial 1 with PDB 4QMZ NEW [66,933 bytes]
- (hist) 2021 DOCK tutorial 3 with PDBID 1S19 [63,778 bytes]
- (hist) 2020 DOCK tutorial 2 with PDBID 2GQG [62,445 bytes]
- (hist) 2022 DOCK tutorial 2 with PDBID 4ZUD [60,340 bytes]
- (hist) 2023 DOCK tutorial 3 with PDBID 2P16 [60,125 bytes]
- (hist) 2020 DOCK tutorial 3 with PDBID 4F4P [58,602 bytes]
- (hist) 2019 DOCK tutorial 2 with PDBID 2P16 [57,855 bytes]
- (hist) 2019 DOCK tutorial 3 with PDBID 3JQZ [56,696 bytes]
- (hist) 2018 DOCK tutorial 2 with PDBID 1C87 [55,817 bytes]
- (hist) 2012 DOCK tutorial with Streptavidin [55,727 bytes]
- (hist) 2024 DOCK tutorial 2 with PDBID 1NDV [55,673 bytes]
- (hist) 2021 DOCK tutorial 4 with PDBID 1EFY [54,683 bytes]
- (hist) 2022 DOCK tutorial 3 with PDBID 1X70 [54,278 bytes]
- (hist) 2018 DOCK tutorial 1 with PDBID 2NNQ [53,597 bytes]
- (hist) 2022 AMS-535 Fall [53,298 bytes]
- (hist) 2021 AMS-535 Fall [52,291 bytes]
- (hist) 2024 DOCK tutorial 3 with PDBID 1Y0X [51,736 bytes]
- (hist) 2012 AMBER Tutorial with Biotin and Streptavidin [50,704 bytes]
- (hist) 2020 AMS-535 Fall [50,685 bytes]
- (hist) 2020 DOCK tutorial 4 with PDBID 6UZW [49,697 bytes]
- (hist) 2023 AMS-535 Fall [49,141 bytes]
- (hist) 2017 DOCK tutorial 2 with PDB 3GPL NEW [46,100 bytes]
- (hist) 2016 DOCK tutorial with Beta Trypsin [44,999 bytes]
- (hist) 2017 Denovo design tutorial 2 with PDB 4QMZ [44,860 bytes]
- (hist) 2017 Denovo design tutorial with PDB 1BJU [41,621 bytes]
- (hist) DOCK Denovo Run [41,595 bytes]
- (hist) 2017 Denovo design tutorial 1 with PDB 1BJU [41,458 bytes]
- (hist) 2014 DOCK tutorial with HIV Protease [41,249 bytes]
- (hist) 2011 AMBER Tutorial with Biotin and Streptavidin [40,962 bytes]
- (hist) 2024 AMS-535 Fall [40,555 bytes]
- (hist) 2023 Denovo tutorial 2 with PDBID 3WZE [40,307 bytes]
- (hist) 2019 Denovo design tutorial 1 with PDB 2BXF [39,711 bytes]
- (hist) 2018 Denovo design tutorial 1 with PDB 2NNQ [37,516 bytes]
- (hist) 2013 AMBER Tutorial with UMP and OMP [36,903 bytes]
- (hist) 2023 Denovo tutorial 1 with PDBID 4S0V [36,043 bytes]
- (hist) 2010 AMBER Tutorial with Biotin and Streptavidin [35,122 bytes]
- (hist) 2019 DOCK tutorial 1 with PDBID 2BXF [34,756 bytes]
- (hist) 2024 Denovo tutorial 1 with PDBID 2ITO [34,649 bytes]
- (hist) 2013 DOCK tutorial with Orotodine Monophosphate Decarboxylase [33,738 bytes]
- (hist) 2014 AMBER tutorial with HIV Protease [33,535 bytes]
- (hist) 2018 AMBER tutorial with 2nnq [33,318 bytes]
- (hist) 2019 AMBER tutorial with PDBID 2BXF [32,977 bytes]
- (hist) 2009 DOCK tutorial with neuraminidase [32,930 bytes]
- (hist) 2015 DOCK tutorial with Poly(ADP-ribose) polymerase (PARP) [32,770 bytes]
- (hist) 2021 Denovo tutorial 4 with PDBID 1EFY [32,053 bytes]
- (hist) 2019 Denovo design tutorial 3 with PDB 3JQZ [31,869 bytes]
- (hist) 2024 Denovo tutorial 3 with PDBID 1Y0X [31,165 bytes]
- (hist) 2020 Denovo tutorial 4 with PDBID 6UZW [31,104 bytes]
- (hist) 2023 AMBER tutorial 1 with PDBID 4S0V [30,469 bytes]
- (hist) 2024 AMBER tutorial 3 with PDBID 1Y0X [29,825 bytes]
- (hist) 2011 AMS-535 Fall [28,922 bytes]
- (hist) 2009 AMS-535 Fall [28,510 bytes]
- (hist) 2018 AMS-535 Fall [28,463 bytes]
- (hist) 2019 AMS-535 Fall [28,417 bytes]
- (hist) 2012 AMS-535 Fall [28,351 bytes]
- (hist) 2010 AMS-535 Fall [28,065 bytes]
- (hist) 2017 AMBER tutorial with 4qmz [27,626 bytes]
- (hist) 2017 AMS-535 Fall [27,489 bytes]
- (hist) 2019 Denovo design tutorial 2 with PDB 2P16 [27,260 bytes]
- (hist) 2016 AMS-535 Fall [27,092 bytes]
- (hist) 2020 Denovo tutorial 2 with PDBID 2GQG [26,981 bytes]
- (hist) 2008 AMS-535 Fall [26,934 bytes]
- (hist) 2021 Denovo tutorial 2 with PDBID 2ZD1 [26,895 bytes]
- (hist) 2023 AMBER tutorial 3 with PDBID 2P16 [26,856 bytes]
- (hist) 2015 AMS-535 Fall [26,374 bytes]
- (hist) 2014 AMS-535 Fall [25,584 bytes]
- (hist) 2015 AMBER tutorial with PARP [25,411 bytes]
- (hist) 2009 AMBER tutorial with Trpcage [25,374 bytes]
- (hist) 2013 AMS-535 Fall [25,104 bytes]
- (hist) 2024 AMBER tutorial 2 with PDBID 1NDV [24,954 bytes]
- (hist) 2021 Denovo tutorial 3 with PDBID 1S19 [24,817 bytes]
- (hist) 2025 Denovo tutorial 2 with PDBID 1XMU [24,699 bytes]
- (hist) 2021 AMBER tutorial 3 with PDBID 1S19 [24,652 bytes]
- (hist) 2021 AMBER tutorial 1 with PDBID 1HW9 [24,585 bytes]
- (hist) 2022 AMBER tutorial 1 with PDBID 6ME2 [24,022 bytes]
- (hist) 2023 Denovo tutorial 3 with PDBID 2P16 [23,889 bytes]
- (hist) 2018 Denovo design tutorial 2 with PDB 1C87 [23,409 bytes]
- (hist) 2016 AMBER tutorial with Beta Trypsin [23,257 bytes]
- (hist) 2022 AMBER tutorial 3 with PDBID 1X70 [22,748 bytes]
- (hist) 2010 DOCK tutorial with Streptavidin [22,311 bytes]
- (hist) 2020 AMS-536 Spring (revised syllabus) [22,302 bytes]
- (hist) 2023 AMBER tutorial 2 with PDBID 3WZE [22,084 bytes]
- (hist) 2018 AMBER tutorial with 1c87 [21,865 bytes]
- (hist) Scoring Functions [20,950 bytes]
- (hist) MD Simulation: Protein in Water (Pt. 2) [20,848 bytes]
- (hist) MD Simulation: Protein in Water [20,691 bytes]
- (hist) Joe and Brian de novo stuff [20,526 bytes]
- (hist) 2011 DOCK tutorial with Streptavidin [20,494 bytes]
- (hist) 2024 AMBER tutorial 1 with PDBID 2ITO [20,208 bytes]
- (hist) 2023 AMS-536 Spring [20,028 bytes]
- (hist) 2022-2023 AMS-532 Fall-Spring [19,968 bytes]
- (hist) 2021-2022 AMS-532 Fall-Spring [19,833 bytes]
- (hist) 2023-2024 AMS-532 Fall-Spring [19,724 bytes]
- (hist) 2021 AMS-536 Spring [19,542 bytes]
- (hist) 2024-2025 AMS-532 Fall-Spring [19,331 bytes]
- (hist) 2022 AMS-536 Spring [19,110 bytes]
- (hist) Rizzo Lab Publications [19,058 bytes]
- (hist) 2021 Denovo tutorial 1 with PDBID 1HW9 [18,621 bytes]
- (hist) Virtual Screening Protocol on BlueGene (IGF-IR system) [17,680 bytes]
- (hist) Test Set Construction SB2024 V1 DOCK6.10 A [17,488 bytes]
- (hist) 2020 Denovo tutorial 3 with PDBID 4F4P [17,453 bytes]
- (hist) 2022 Denovo tutorial 2 with PDBID 4ZUD [17,142 bytes]
- (hist) 2020 AMBER tutorial with PDBID 3VJK [17,048 bytes]
- (hist) 2008 AMBER tutorial [15,983 bytes]
- (hist) 2024 AMS-536 Spring [15,549 bytes]
- (hist) 2025 AMS-536 Spring [15,145 bytes]
- (hist) 2022 Denovo tutorial 1 with PDBID 6ME2 [15,136 bytes]
- (hist) Virtual Screening Protocol [15,092 bytes]
- (hist) 2020 Denovo tutorial 1 with PDBID 3VJK [14,772 bytes]
- (hist) AutoDock4 Pose Reproduction Tutorial [14,684 bytes]
- (hist) 2019 Covalent docking tutorial 1 with PDB 5VKG [14,530 bytes]
- (hist) 2008 DOCK tutorial with Gleevec [13,826 bytes]
- (hist) AMS-531 Laboratory Rotations in Computational Biology [13,587 bytes]
- (hist) 2015-2016 AMS-532 Fall-Spring [13,519 bytes]
- (hist) 2025 DOCK tutorial 2 with PDBID 1XMU [13,440 bytes]
- (hist) Nonstandard residues prep [13,437 bytes]
- (hist) 2020 AMS-536 Spring (original syllabus) [13,326 bytes]
- (hist) Developer's Info Goals [13,176 bytes]
- (hist) 2021 DOCK tutorial 2 with PDBID 2ZD1 [13,054 bytes]
- (hist) 2025 DOCK GA tutorial 2 with 1XMU [13,021 bytes]
- (hist) 2017-2018 AMS-532 Fall-Spring [12,719 bytes]
- (hist) 2008 DOCK tutorial with 1LAH [12,435 bytes]
- (hist) 2014-2015 AMS-532 Fall-Spring [12,433 bytes]
- (hist) 2016-2017 AMS-532 Fall-Spring [12,415 bytes]
- (hist) 2024 DOCK GA tutorial 1 with 1NDV [12,380 bytes]
- (hist) AMBER TI Tutorials [12,267 bytes]
- (hist) 2018-2019 AMS-532 Fall-Spring [12,190 bytes]
- (hist) 2013-2014 AMS-532 Fall-Spring [12,134 bytes]
- (hist) NAMD on Seawulf [11,737 bytes]
- (hist) 2019 DOCK GA tutorial 1 with 2NNQ [11,227 bytes]
- (hist) 2011-2012 AMS-532 Fall-Spring [10,608 bytes]
- (hist) SB2010 [10,590 bytes]
- (hist) Genion.mdp [10,324 bytes]
- (hist) 2022 Denovo tutorial 3 with PDBID 1X70 [10,318 bytes]
- (hist) DOCK Denovo Refinement [10,250 bytes]
- (hist) 2020-2021 AMS-532 Fall-Spring [10,200 bytes]
- (hist) Cross Docking SB2024 V1 DOCK6.10 A [10,059 bytes]
- (hist) 2010-2011 AMS-532 Fall-Spring [9,966 bytes]
- (hist) 2017 Denovo refine tutorial with PDB 1BJU [9,943 bytes]
- (hist) 2017 Denovo refinement tutorial with PDB 1BJU [9,678 bytes]
- (hist) Rizzo Lab Research [9,458 bytes]
- (hist) Past Announcements [8,552 bytes]
- (hist) DOCK DN Input File(s) [8,420 bytes]
- (hist) Example of an Input file [8,420 bytes]
- (hist) SB2012 [8,268 bytes]
- (hist) 2012 GRD-500 Spring [8,050 bytes]
- (hist) 2011-2012 GRD-500 Fall-Spring [8,050 bytes]
- (hist) AMS-532 Journal Club in Computational Biology [8,030 bytes]
- (hist) 2019 AMS-536 Spring [7,580 bytes]
- (hist) 2012 AMS-536 Spring [7,543 bytes]
- (hist) DOCK DN Development Goals [7,468 bytes]
- (hist) Amber on Seawulf (compilation) [7,413 bytes]
- (hist) AMS-532 Laboratory Rotations and Journal Club in Computational Biology [7,291 bytes]
- (hist) Example of an CONGA Input file [7,182 bytes]
- (hist) Example of an Single Molecule Evolution Input file [7,181 bytes]
- (hist) Example of an Ensemble Evolution Input file [7,177 bytes]
- (hist) 2015 AMS-536 Spring [7,084 bytes]
- (hist) BASH scripting [7,045 bytes]
- (hist) AutoDock Vina Pose Reproduction Tutorial [7,014 bytes]
- (hist) DOCK VS Benchmarking [6,935 bytes]
- (hist) Per-residue energy decompositions [6,852 bytes]
- (hist) 2018 AMS-536 Spring [6,801 bytes]
- (hist) Testset Protocols [6,770 bytes]
- (hist) De novo Developer Progress [6,743 bytes]
- (hist) 2016 AMS-536 Spring [6,738 bytes]
- (hist) AMS-536 Molecular Modeling of Biological Molecules [6,725 bytes]
- (hist) 2013 RCR GROUP MEETING [6,681 bytes]
- (hist) 2017 AMS-536 Spring [6,673 bytes]
- (hist) 2015 RCR GROUP MEETING [6,566 bytes]
- (hist) AMS-535 Introduction to Computational Structural Biology and Drug Design [6,488 bytes]
- (hist) DOCK Benchmarking [6,458 bytes]
- (hist) 2014 AMS-536 Spring [6,427 bytes]
- (hist) Development Goals Archive [6,382 bytes]
- (hist) 2014 RCR GROUP MEETING [6,358 bytes]
- (hist) 2012 RCR GROUP MEETING [6,357 bytes]
- (hist) Rizzo Lab Members and Contact Information [6,235 bytes]
- (hist) 2010 AMS-536 Spring [5,986 bytes]
- (hist) 2011 AMS-536 Spring [5,905 bytes]
- (hist) Database Enrichment SB2024 V1 DOCK6.10 A [5,882 bytes]
- (hist) 2011 GRD-500 Spring [5,872 bytes]
- (hist) 2010-2011 GRD-500 Fall-Spring [5,872 bytes]
- (hist) 2016 RCR GROUP MEETING [5,862 bytes]
- (hist) 2013 AMS-536 Spring [5,803 bytes]
- (hist) Analysis Tools Repository [5,762 bytes]
- (hist) 2020 DOCK tutorial 2 with PDBID XXXX [5,758 bytes]
- (hist) BOSS Pure Liquid Simulation Notes [5,740 bytes]
- (hist) 2011 RCR GROUP MEETING [5,659 bytes]
- (hist) 2009 AMS-536 Spring [5,638 bytes]
- (hist) Xmgrace [5,581 bytes]
- (hist) 2007-2008 AMS-532 Fall-Spring [5,561 bytes]
- (hist) SB2021.v1 [5,555 bytes]
- (hist) 2017 Dock tutorial [5,467 bytes]
- (hist) Activating your Seawulf Account [5,425 bytes]
- (hist) 2006-2007 AMS-532 Fall-Spring [5,318 bytes]
- (hist) 2017a DOCK tutorial [5,303 bytes]
- (hist) 2008 AMS-536 Spring [5,225 bytes]
- (hist) 2008-2009 AMS-532 Fall-Spring [5,101 bytes]
- (hist) DOCK GA Parameters [5,043 bytes]
- (hist) 2018 [5,026 bytes]
- (hist) DOCK CV Input File(s) [4,925 bytes]
- (hist) 2009-2010 AMS-532 Fall-Spring [4,860 bytes]
- (hist) Pose Reproduction SB2024 V1 DOCK6.10 A [4,829 bytes]
- (hist) DOCK GA Parameter List [4,724 bytes]
- (hist) CONGA Parameter List [4,724 bytes]
- (hist) GRD-500 Integrity in Science [4,589 bytes]
- (hist) Restraint01.pdb [4,561 bytes]
- (hist) Restraint04.pdb [4,558 bytes]
- (hist) Virtual Screening Compound Ordering SOP [4,498 bytes]
- (hist) RGD [4,424 bytes]
- (hist) 2012-2013 AMS-532 Fall-Spring [4,340 bytes]
- (hist) Flex.in [4,327 bytes]
- (hist) DOCK6 POSE Reproduction [4,323 bytes]
- (hist) SLURM [4,319 bytes]
- (hist) Ubq npt.mdp [4,249 bytes]
- (hist) Ubq md.mdp [4,141 bytes]
- (hist) Automated Family generation from PDB [4,021 bytes]
- (hist) Automated Families generation from the Protein Databank [4,021 bytes]
- (hist) Ubq nvt.mdp [3,999 bytes]
- (hist) TIMD extraction.py [3,888 bytes]
- (hist) DOCK GA Development Goals [3,840 bytes]
- (hist) Compiling GROMACS on Cluster [3,789 bytes]
- (hist) PBS Queue [3,567 bytes]
- (hist) 01mi.in [3,552 bytes]
- (hist) Analog Library - Pubchem & Zinc [3,493 bytes]
- (hist) 3D Analog Library Generation Using Pubchem and Zinc [3,493 bytes]
- (hist) Other Meetings [3,489 bytes]
- (hist) Apply for cluster [3,485 bytes]
- (hist) Rigid.in [3,481 bytes]
- (hist) 04md.in [3,478 bytes]
- (hist) DOCK DN Benchmarking [3,441 bytes]
- (hist) De novo Benchmarking [3,441 bytes]
- (hist) DOCK VS Development Goals [3,421 bytes]
- (hist) 2019 RCR GROUP MEETING [3,400 bytes]
- (hist) 2019-2020 AMS-532 Fall-Spring [3,260 bytes]
- (hist) Chimera [3,255 bytes]
- (hist) With t4 step3 inputgen.bash [3,132 bytes]
- (hist) With t4 step1 inputgen.bash [3,130 bytes]
- (hist) No t4 step3 inputgen.bash [3,126 bytes]
- (hist) No t4 step1 inputgen.bash [3,120 bytes]
- (hist) Parameter List [3,030 bytes]
- (hist) DOCK DN Parameters [3,028 bytes]
- (hist) Setup ssh tunnel to NYBlue fen [2,802 bytes]
- (hist) Scp files from cluster to NYBlue [2,791 bytes]