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Showing below up to 250 results in range #1 to #250.

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  1. (hist) ‎2020 DOCK tutorial 1 with PDBID 3VJK ‎[69,212 bytes]
  2. (hist) ‎2022 DOCK tutorial 1 with PDBID 6ME2 ‎[67,761 bytes]
  3. (hist) ‎2021 DOCK tutorial 1 with PDBID 1HW9 ‎[67,733 bytes]
  4. (hist) ‎2017 DOCK tutorial 1 with PDB 4QMZ NEW ‎[66,933 bytes]
  5. (hist) ‎2021 DOCK tutorial 3 with PDBID 1S19 ‎[63,778 bytes]
  6. (hist) ‎2020 DOCK tutorial 2 with PDBID 2GQG ‎[62,445 bytes]
  7. (hist) ‎2022 DOCK tutorial 2 with PDBID 4ZUD ‎[60,340 bytes]
  8. (hist) ‎2020 DOCK tutorial 3 with PDBID 4F4P ‎[58,602 bytes]
  9. (hist) ‎2019 DOCK tutorial 2 with PDBID 2P16 ‎[57,855 bytes]
  10. (hist) ‎2019 DOCK tutorial 3 with PDBID 3JQZ ‎[56,696 bytes]
  11. (hist) ‎2018 DOCK tutorial 2 with PDBID 1C87 ‎[55,817 bytes]
  12. (hist) ‎2012 DOCK tutorial with Streptavidin ‎[55,727 bytes]
  13. (hist) ‎2021 DOCK tutorial 4 with PDBID 1EFY ‎[54,683 bytes]
  14. (hist) ‎2022 DOCK tutorial 3 with PDBID 1X70 ‎[54,193 bytes]
  15. (hist) ‎2018 DOCK tutorial 1 with PDBID 2NNQ ‎[53,597 bytes]
  16. (hist) ‎2022 AMS-535 Fall ‎[52,877 bytes]
  17. (hist) ‎2021 AMS-535 Fall ‎[52,291 bytes]
  18. (hist) ‎2012 AMBER Tutorial with Biotin and Streptavidin ‎[50,704 bytes]
  19. (hist) ‎2020 AMS-535 Fall ‎[50,685 bytes]
  20. (hist) ‎2020 DOCK tutorial 4 with PDBID 6UZW ‎[49,697 bytes]
  21. (hist) ‎2017 DOCK tutorial 2 with PDB 3GPL NEW ‎[46,100 bytes]
  22. (hist) ‎2016 DOCK tutorial with Beta Trypsin ‎[44,999 bytes]
  23. (hist) ‎2017 Denovo design tutorial 2 with PDB 4QMZ ‎[44,860 bytes]
  24. (hist) ‎2017 Denovo design tutorial with PDB 1BJU ‎[41,621 bytes]
  25. (hist) ‎DOCK Denovo Run ‎[41,595 bytes]
  26. (hist) ‎2017 Denovo design tutorial 1 with PDB 1BJU ‎[41,458 bytes]
  27. (hist) ‎2014 DOCK tutorial with HIV Protease ‎[41,249 bytes]
  28. (hist) ‎2011 AMBER Tutorial with Biotin and Streptavidin ‎[40,962 bytes]
  29. (hist) ‎2019 Denovo design tutorial 1 with PDB 2BXF ‎[39,711 bytes]
  30. (hist) ‎2018 Denovo design tutorial 1 with PDB 2NNQ ‎[37,516 bytes]
  31. (hist) ‎2013 AMBER Tutorial with UMP and OMP ‎[36,903 bytes]
  32. (hist) ‎2010 AMBER Tutorial with Biotin and Streptavidin ‎[35,122 bytes]
  33. (hist) ‎2019 DOCK tutorial 1 with PDBID 2BXF ‎[34,756 bytes]
  34. (hist) ‎2013 DOCK tutorial with Orotodine Monophosphate Decarboxylase ‎[33,738 bytes]
  35. (hist) ‎2014 AMBER tutorial with HIV Protease ‎[33,535 bytes]
  36. (hist) ‎2018 AMBER tutorial with 2nnq ‎[33,318 bytes]
  37. (hist) ‎2019 AMBER tutorial with PDBID 2BXF ‎[32,977 bytes]
  38. (hist) ‎2009 DOCK tutorial with neuraminidase ‎[32,930 bytes]
  39. (hist) ‎2015 DOCK tutorial with Poly(ADP-ribose) polymerase (PARP) ‎[32,770 bytes]
  40. (hist) ‎2021 Denovo tutorial 4 with PDBID 1EFY ‎[32,053 bytes]
  41. (hist) ‎2019 Denovo design tutorial 3 with PDB 3JQZ ‎[31,869 bytes]
  42. (hist) ‎2020 Denovo tutorial 4 with PDBID 6UZW ‎[31,104 bytes]
  43. (hist) ‎2011 AMS-535 Fall ‎[28,922 bytes]
  44. (hist) ‎2009 AMS-535 Fall ‎[28,510 bytes]
  45. (hist) ‎2018 AMS-535 Fall ‎[28,458 bytes]
  46. (hist) ‎2019 AMS-535 Fall ‎[28,417 bytes]
  47. (hist) ‎2012 AMS-535 Fall ‎[28,351 bytes]
  48. (hist) ‎2010 AMS-535 Fall ‎[28,065 bytes]
  49. (hist) ‎2017 AMBER tutorial with 4qmz ‎[27,626 bytes]
  50. (hist) ‎2017 AMS-535 Fall ‎[27,489 bytes]
  51. (hist) ‎2019 Denovo design tutorial 2 with PDB 2P16 ‎[27,260 bytes]
  52. (hist) ‎2016 AMS-535 Fall ‎[27,092 bytes]
  53. (hist) ‎2020 Denovo tutorial 2 with PDBID 2GQG ‎[26,981 bytes]
  54. (hist) ‎2008 AMS-535 Fall ‎[26,934 bytes]
  55. (hist) ‎2021 Denovo tutorial 2 with PDBID 2ZD1 ‎[26,895 bytes]
  56. (hist) ‎2015 AMS-535 Fall ‎[26,374 bytes]
  57. (hist) ‎2014 AMS-535 Fall ‎[25,584 bytes]
  58. (hist) ‎2015 AMBER tutorial with PARP ‎[25,411 bytes]
  59. (hist) ‎2009 AMBER tutorial with Trpcage ‎[25,374 bytes]
  60. (hist) ‎2013 AMS-535 Fall ‎[25,104 bytes]
  61. (hist) ‎2021 Denovo tutorial 3 with PDBID 1S19 ‎[24,817 bytes]
  62. (hist) ‎2021 AMBER tutorial 3 with PDBID 1S19 ‎[24,652 bytes]
  63. (hist) ‎2021 AMBER tutorial 1 with PDBID 1HW9 ‎[24,585 bytes]
  64. (hist) ‎2022 AMBER tutorial 1 with PDBID 6ME2 ‎[24,022 bytes]
  65. (hist) ‎2018 Denovo design tutorial 2 with PDB 1C87 ‎[23,409 bytes]
  66. (hist) ‎2016 AMBER tutorial with Beta Trypsin ‎[23,257 bytes]
  67. (hist) ‎2022 AMBER tutorial 3 with PDBID 1X70 ‎[22,748 bytes]
  68. (hist) ‎2010 DOCK tutorial with Streptavidin ‎[22,311 bytes]
  69. (hist) ‎2020 AMS-536 Spring (revised syllabus) ‎[22,302 bytes]
  70. (hist) ‎2018 AMBER tutorial with 1c87 ‎[21,865 bytes]
  71. (hist) ‎Scoring Functions ‎[20,950 bytes]
  72. (hist) ‎MD Simulation: Protein in Water (Pt. 2) ‎[20,848 bytes]
  73. (hist) ‎MD Simulation: Protein in Water ‎[20,691 bytes]
  74. (hist) ‎Joe and Brian de novo stuff ‎[20,526 bytes]
  75. (hist) ‎2011 DOCK tutorial with Streptavidin ‎[20,494 bytes]
  76. (hist) ‎2021-2022 AMS-532 Fall-Spring ‎[19,833 bytes]
  77. (hist) ‎2022-2023 AMS-532 Fall-Spring ‎[19,628 bytes]
  78. (hist) ‎2021 AMS-536 Spring ‎[19,542 bytes]
  79. (hist) ‎2022 AMS-536 Spring ‎[19,110 bytes]
  80. (hist) ‎2021 Denovo tutorial 1 with PDBID 1HW9 ‎[18,621 bytes]
  81. (hist) ‎Virtual Screening Protocol on BlueGene (IGF-IR system) ‎[17,680 bytes]
  82. (hist) ‎2020 Denovo tutorial 3 with PDBID 4F4P ‎[17,453 bytes]
  83. (hist) ‎2022 Denovo tutorial 2 with PDBID 4ZUD ‎[17,142 bytes]
  84. (hist) ‎2020 AMBER tutorial with PDBID 3VJK ‎[17,048 bytes]
  85. (hist) ‎Rizzo Lab Publications ‎[16,200 bytes]
  86. (hist) ‎2008 AMBER tutorial ‎[15,983 bytes]
  87. (hist) ‎2022 Denovo tutorial 1 with PDBID 6ME2 ‎[15,136 bytes]
  88. (hist) ‎Virtual Screening Protocol ‎[15,092 bytes]
  89. (hist) ‎Ligand Enrichment Tutorial ‎[14,979 bytes]
  90. (hist) ‎2020 Denovo tutorial 1 with PDBID 3VJK ‎[14,772 bytes]
  91. (hist) ‎AutoDock4 Pose Reproduction Tutorial ‎[14,684 bytes]
  92. (hist) ‎2019 Covalent docking tutorial 1 with PDB 5VKG ‎[14,530 bytes]
  93. (hist) ‎2008 DOCK tutorial with Gleevec ‎[13,826 bytes]
  94. (hist) ‎2015-2016 AMS-532 Fall-Spring ‎[13,519 bytes]
  95. (hist) ‎Nonstandard residues prep ‎[13,437 bytes]
  96. (hist) ‎2020 AMS-536 Spring (original syllabus) ‎[13,326 bytes]
  97. (hist) ‎2021 DOCK tutorial 2 with PDBID 2ZD1 ‎[13,054 bytes]
  98. (hist) ‎AMS-531 Laboratory Rotations in Computational Biology ‎[13,031 bytes]
  99. (hist) ‎2017-2018 AMS-532 Fall-Spring ‎[12,719 bytes]
  100. (hist) ‎2008 DOCK tutorial with 1LAH ‎[12,435 bytes]
  101. (hist) ‎2014-2015 AMS-532 Fall-Spring ‎[12,433 bytes]
  102. (hist) ‎2016-2017 AMS-532 Fall-Spring ‎[12,415 bytes]
  103. (hist) ‎AMBER TI Tutorials ‎[12,267 bytes]
  104. (hist) ‎2018-2019 AMS-532 Fall-Spring ‎[12,190 bytes]
  105. (hist) ‎2013-2014 AMS-532 Fall-Spring ‎[12,134 bytes]
  106. (hist) ‎NAMD on Seawulf ‎[11,737 bytes]
  107. (hist) ‎2019 DOCK GA tutorial 1 with 2NNQ ‎[11,328 bytes]
  108. (hist) ‎2011-2012 AMS-532 Fall-Spring ‎[10,608 bytes]
  109. (hist) ‎SB2010 ‎[10,480 bytes]
  110. (hist) ‎Genion.mdp ‎[10,324 bytes]
  111. (hist) ‎2022 Denovo tutorial 3 with PDBID 1X70 ‎[10,318 bytes]
  112. (hist) ‎DOCK Denovo Refinement ‎[10,250 bytes]
  113. (hist) ‎2020-2021 AMS-532 Fall-Spring ‎[10,200 bytes]
  114. (hist) ‎2010-2011 AMS-532 Fall-Spring ‎[9,966 bytes]
  115. (hist) ‎2017 Denovo refine tutorial with PDB 1BJU ‎[9,943 bytes]
  116. (hist) ‎2017 Denovo refinement tutorial with PDB 1BJU ‎[9,678 bytes]
  117. (hist) ‎Rizzo Lab Research ‎[9,461 bytes]
  118. (hist) ‎Past Announcements ‎[8,552 bytes]
  119. (hist) ‎DOCK DN Input File(s) ‎[8,420 bytes]
  120. (hist) ‎Example of an Input file ‎[8,420 bytes]
  121. (hist) ‎SB2012 ‎[8,083 bytes]
  122. (hist) ‎2012 GRD-500 Spring ‎[8,050 bytes]
  123. (hist) ‎2011-2012 GRD-500 Fall-Spring ‎[8,050 bytes]
  124. (hist) ‎AMS-532 Journal Club in Computational Biology ‎[7,935 bytes]
  125. (hist) ‎2019 AMS-536 Spring ‎[7,580 bytes]
  126. (hist) ‎2012 AMS-536 Spring ‎[7,543 bytes]
  127. (hist) ‎Amber on Seawulf (compilation) ‎[7,413 bytes]
  128. (hist) ‎DOCK DN Development Goals ‎[7,368 bytes]
  129. (hist) ‎AMS-532 Laboratory Rotations and Journal Club in Computational Biology ‎[7,291 bytes]
  130. (hist) ‎Example of an CONGA Input file ‎[7,182 bytes]
  131. (hist) ‎Example of an Single Molecule Evolution Input file ‎[7,181 bytes]
  132. (hist) ‎Example of an Ensemble Evolution Input file ‎[7,177 bytes]
  133. (hist) ‎2015 AMS-536 Spring ‎[7,084 bytes]
  134. (hist) ‎BASH scripting ‎[7,045 bytes]
  135. (hist) ‎AutoDock Vina Pose Reproduction Tutorial ‎[7,014 bytes]
  136. (hist) ‎DOCK VS Benchmarking ‎[6,963 bytes]
  137. (hist) ‎Per-residue energy decompositions ‎[6,852 bytes]
  138. (hist) ‎AMS-536 Molecular Modeling of Biological Molecules ‎[6,842 bytes]
  139. (hist) ‎2018 AMS-536 Spring ‎[6,801 bytes]
  140. (hist) ‎Testset Protocols ‎[6,770 bytes]
  141. (hist) ‎De novo Developer Progress ‎[6,743 bytes]
  142. (hist) ‎2016 AMS-536 Spring ‎[6,738 bytes]
  143. (hist) ‎2013 RCR GROUP MEETING ‎[6,681 bytes]
  144. (hist) ‎2017 AMS-536 Spring ‎[6,673 bytes]
  145. (hist) ‎2015 RCR GROUP MEETING ‎[6,566 bytes]
  146. (hist) ‎DOCK Benchmarking ‎[6,458 bytes]
  147. (hist) ‎2014 AMS-536 Spring ‎[6,427 bytes]
  148. (hist) ‎AMS-535 Introduction to Computational Structural Biology and Drug Design ‎[6,416 bytes]
  149. (hist) ‎2014 RCR GROUP MEETING ‎[6,358 bytes]
  150. (hist) ‎2012 RCR GROUP MEETING ‎[6,357 bytes]
  151. (hist) ‎2010 AMS-536 Spring ‎[5,986 bytes]
  152. (hist) ‎2011 AMS-536 Spring ‎[5,905 bytes]
  153. (hist) ‎2011 GRD-500 Spring ‎[5,872 bytes]
  154. (hist) ‎2010-2011 GRD-500 Fall-Spring ‎[5,872 bytes]
  155. (hist) ‎2016 RCR GROUP MEETING ‎[5,862 bytes]
  156. (hist) ‎Rizzo Lab Members and Contact Information ‎[5,840 bytes]
  157. (hist) ‎2013 AMS-536 Spring ‎[5,803 bytes]
  158. (hist) ‎Analysis Tools Repository ‎[5,762 bytes]
  159. (hist) ‎2020 DOCK tutorial 2 with PDBID XXXX ‎[5,758 bytes]
  160. (hist) ‎BOSS Pure Liquid Simulation Notes ‎[5,740 bytes]
  161. (hist) ‎2011 RCR GROUP MEETING ‎[5,659 bytes]
  162. (hist) ‎2009 AMS-536 Spring ‎[5,638 bytes]
  163. (hist) ‎Xmgrace ‎[5,581 bytes]
  164. (hist) ‎2007-2008 AMS-532 Fall-Spring ‎[5,561 bytes]
  165. (hist) ‎2017 Dock tutorial ‎[5,467 bytes]
  166. (hist) ‎Activating your Seawulf Account ‎[5,425 bytes]
  167. (hist) ‎SB2021.v1 ‎[5,385 bytes]
  168. (hist) ‎2006-2007 AMS-532 Fall-Spring ‎[5,318 bytes]
  169. (hist) ‎2017a DOCK tutorial ‎[5,303 bytes]
  170. (hist) ‎2008 AMS-536 Spring ‎[5,225 bytes]
  171. (hist) ‎2008-2009 AMS-532 Fall-Spring ‎[5,101 bytes]
  172. (hist) ‎DOCK GA Parameters ‎[5,043 bytes]
  173. (hist) ‎2018 ‎[5,026 bytes]
  174. (hist) ‎DOCK CV Input File(s) ‎[4,925 bytes]
  175. (hist) ‎2009-2010 AMS-532 Fall-Spring ‎[4,860 bytes]
  176. (hist) ‎DOCK GA Parameter List ‎[4,724 bytes]
  177. (hist) ‎CONGA Parameter List ‎[4,724 bytes]
  178. (hist) ‎GRD-500 Integrity in Science ‎[4,589 bytes]
  179. (hist) ‎Restraint01.pdb ‎[4,561 bytes]
  180. (hist) ‎Restraint04.pdb ‎[4,558 bytes]
  181. (hist) ‎Virtual Screening SOP ‎[4,498 bytes]
  182. (hist) ‎RGD ‎[4,424 bytes]
  183. (hist) ‎2012-2013 AMS-532 Fall-Spring ‎[4,340 bytes]
  184. (hist) ‎Flex.in ‎[4,327 bytes]
  185. (hist) ‎DOCK6 POSE Reproduction ‎[4,323 bytes]
  186. (hist) ‎SLURM ‎[4,319 bytes]
  187. (hist) ‎Ubq npt.mdp ‎[4,249 bytes]
  188. (hist) ‎Ubq md.mdp ‎[4,141 bytes]
  189. (hist) ‎Automated Family generation from PDB ‎[4,021 bytes]
  190. (hist) ‎Automated Families generation from the Protein Databank ‎[4,021 bytes]
  191. (hist) ‎Ubq nvt.mdp ‎[3,999 bytes]
  192. (hist) ‎TIMD extraction.py ‎[3,888 bytes]
  193. (hist) ‎Compiling GROMACS on Cluster ‎[3,789 bytes]
  194. (hist) ‎PBS Queue ‎[3,567 bytes]
  195. (hist) ‎01mi.in ‎[3,552 bytes]
  196. (hist) ‎Analog Library - Pubchem & Zinc ‎[3,493 bytes]
  197. (hist) ‎3D Analog Library Generation Using Pubchem and Zinc ‎[3,493 bytes]
  198. (hist) ‎Other Meetings ‎[3,489 bytes]
  199. (hist) ‎Apply for cluster ‎[3,485 bytes]
  200. (hist) ‎Rigid.in ‎[3,481 bytes]
  201. (hist) ‎04md.in ‎[3,478 bytes]
  202. (hist) ‎DOCK DN Benchmarking ‎[3,441 bytes]
  203. (hist) ‎De novo Benchmarking ‎[3,441 bytes]
  204. (hist) ‎2019 RCR GROUP MEETING ‎[3,400 bytes]
  205. (hist) ‎2019-2020 AMS-532 Fall-Spring ‎[3,260 bytes]
  206. (hist) ‎Chimera ‎[3,255 bytes]
  207. (hist) ‎DOCK VS Development Goals ‎[3,238 bytes]
  208. (hist) ‎With t4 step3 inputgen.bash ‎[3,132 bytes]
  209. (hist) ‎With t4 step1 inputgen.bash ‎[3,130 bytes]
  210. (hist) ‎No t4 step3 inputgen.bash ‎[3,126 bytes]
  211. (hist) ‎No t4 step1 inputgen.bash ‎[3,120 bytes]
  212. (hist) ‎Parameter List ‎[3,030 bytes]
  213. (hist) ‎DOCK DN Parameters ‎[3,028 bytes]
  214. (hist) ‎DOCK GA Development Goals ‎[2,940 bytes]
  215. (hist) ‎Rizzo Lab Information and Tutorials ‎[2,860 bytes]
  216. (hist) ‎Setup ssh tunnel to NYBlue fen ‎[2,802 bytes]
  217. (hist) ‎Scp files from cluster to NYBlue ‎[2,791 bytes]
  218. (hist) ‎TIMD integration.py ‎[2,731 bytes]
  219. (hist) ‎Fragment Library Generation ‎[2,653 bytes]
  220. (hist) ‎2017 RCR GROUP MEETING ‎[2,639 bytes]
  221. (hist) ‎DOCK Installation ‎[2,577 bytes]
  222. (hist) ‎Installing DOCK ‎[2,577 bytes]
  223. (hist) ‎Run.java.csh ‎[2,566 bytes]
  224. (hist) ‎Formatting your Thesis ‎[2,557 bytes]
  225. (hist) ‎Formating your Thesis ‎[2,557 bytes]
  226. (hist) ‎Joint Group Meeting 2007-2009 ‎[2,541 bytes]
  227. (hist) ‎AutoDock4 Benchmark Results ‎[2,506 bytes]
  228. (hist) ‎With t4 step2 equiprod.bash ‎[2,499 bytes]
  229. (hist) ‎No t4 step2 equiprod.bash ‎[2,493 bytes]
  230. (hist) ‎Setting up RSA SecureID token ‎[2,470 bytes]
  231. (hist) ‎Vi ‎[2,466 bytes]
  232. (hist) ‎NAMD Amber inputs ‎[2,405 bytes]
  233. (hist) ‎Seawulf Items Needed ‎[2,402 bytes]
  234. (hist) ‎Stony Brook Joint Group Meetings in Computational Structural Biology ‎[2,397 bytes]
  235. (hist) ‎MATLAB ‎[2,365 bytes]
  236. (hist) ‎Apply for NYBlue ‎[2,331 bytes]
  237. (hist) ‎Server Administration ‎[2,329 bytes]
  238. (hist) ‎MPICH ‎[2,313 bytes]
  239. (hist) ‎Rizzo Lab Weekly Group Meetings ‎[2,287 bytes]
  240. (hist) ‎Make Unique script usage ‎[2,255 bytes]
  241. (hist) ‎Families in the Protein Databank ‎[2,247 bytes]
  242. (hist) ‎Slick awk tricks ‎[2,188 bytes]
  243. (hist) ‎Stupid awk tricks ‎[2,188 bytes]
  244. (hist) ‎Ubq min.mdp ‎[2,155 bytes]
  245. (hist) ‎Cluster compilations ‎[2,141 bytes]
  246. (hist) ‎AMS-532 Guidlines ‎[2,117 bytes]
  247. (hist) ‎TIMD integration prep.py ‎[2,100 bytes]
  248. (hist) ‎AMS-532: Lab Rotations/Journal Club Guidelines ‎[2,065 bytes]
  249. (hist) ‎Integration.pl ‎[2,056 bytes]
  250. (hist) ‎Unix ‎[2,049 bytes]

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