Articles with the most revisions

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Showing below up to 250 results in range #1 to #250.

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  1. 2025 DOCK tutorial 1 with PDBID 1O86‏‎ (348 revisions)
  2. 2023 DOCK tutorial 1 with PDBID 4S0V‏‎ (264 revisions)
  3. Joe and Brian de novo stuff‏‎ (253 revisions)
  4. Rizzo Lab Members and Contact Information‏‎ (241 revisions)
  5. Rizzo Lab Information and Tutorials‏‎ (230 revisions)
  6. 2012 DOCK tutorial with Streptavidin‏‎ (230 revisions)
  7. Rizzo Lab Research‏‎ (182 revisions)
  8. 2014 DOCK tutorial with HIV Protease‏‎ (182 revisions)
  9. 2012 AMBER Tutorial with Biotin and Streptavidin‏‎ (174 revisions)
  10. 2020 AMS-535 Fall‏‎ (171 revisions)
  11. 2024 AMS-535 Fall‏‎ (165 revisions)
  12. 2016 DOCK tutorial with Beta Trypsin‏‎ (164 revisions)
  13. 2020 DOCK tutorial 1 with PDBID 3VJK‏‎ (158 revisions)
  14. 2010 AMBER Tutorial with Biotin and Streptavidin‏‎ (157 revisions)
  15. 2020 DOCK tutorial 3 with PDBID 4F4P‏‎ (155 revisions)
  16. Test Set Construction SB2024 V1 DOCK6.10 A‏‎ (151 revisions)
  17. 2013 DOCK tutorial with Orotodine Monophosphate Decarboxylase‏‎ (146 revisions)
  18. 2021 DOCK tutorial 2 with PDBID 2ZD1‏‎ (143 revisions)
  19. 2021 DOCK tutorial 1 with PDBID 1HW9‏‎ (142 revisions)
  20. 2019 DOCK tutorial 3 with PDBID 3JQZ‏‎ (138 revisions)
  21. 2019 DOCK tutorial 2 with PDBID 2P16‏‎ (130 revisions)
  22. 2022 DOCK tutorial 1 with PDBID 6ME2‏‎ (120 revisions)
  23. AMS-531 Laboratory Rotations in Computational Biology‏‎ (119 revisions)
  24. 2023 DOCK tutorial 2 with PDBID 3WZE‏‎ (119 revisions)
  25. Rizzo Lab Publications‏‎ (119 revisions)
  26. 2010-2011 AMS-532 Fall-Spring‏‎ (119 revisions)
  27. 2023 AMBER tutorial 1 with PDBID 4S0V‏‎ (118 revisions)
  28. 2020 AMS-536 Spring (revised syllabus)‏‎ (116 revisions)
  29. 2015 DOCK tutorial with Poly(ADP-ribose) polymerase (PARP)‏‎ (112 revisions)
  30. 2023 AMS-535 Fall‏‎ (109 revisions)
  31. 2021 DOCK tutorial 3 with PDBID 1S19‏‎ (108 revisions)
  32. Rizzo Lab Downloads‏‎ (105 revisions)
  33. 2023 DOCK tutorial 3 with PDBID 2P16‏‎ (105 revisions)
  34. 2014 AMBER tutorial with HIV Protease‏‎ (104 revisions)
  35. 2022 DOCK tutorial 3 with PDBID 1X70‏‎ (102 revisions)
  36. 2022 DOCK tutorial 2 with PDBID 4ZUD‏‎ (95 revisions)
  37. 2024 DOCK tutorial 2 with PDBID 1NDV‏‎ (94 revisions)
  38. 2020 DOCK tutorial 4 with PDBID 6UZW‏‎ (93 revisions)
  39. 2018 DOCK tutorial 1 with PDBID 2NNQ‏‎ (93 revisions)
  40. AMBER TI Tutorials‏‎ (88 revisions)
  41. 2011 AMBER Tutorial with Biotin and Streptavidin‏‎ (87 revisions)
  42. 2021 DOCK tutorial 4 with PDBID 1EFY‏‎ (87 revisions)
  43. 2013 AMBER Tutorial with UMP and OMP‏‎ (86 revisions)
  44. 2010 DOCK tutorial with Streptavidin‏‎ (86 revisions)
  45. 2021 AMS-536 Spring‏‎ (85 revisions)
  46. DOCK Denovo Run‏‎ (82 revisions)
  47. AMS-535 Introduction to Computational Structural Biology and Drug Design‏‎ (80 revisions)
  48. 2023 Denovo tutorial 2 with PDBID 3WZE‏‎ (79 revisions)
  49. 2010 AMS-535 Fall‏‎ (79 revisions)
  50. 2023 Denovo tutorial 1 with PDBID 4S0V‏‎ (75 revisions)
  51. 2025 DOCK tutorial 2 with PDBID 1XMU‏‎ (75 revisions)
  52. Developer's Info Goals‏‎ (73 revisions)
  53. AMS-536 Molecular Modeling of Biological Molecules‏‎ (72 revisions)
  54. 2009 AMS-535 Fall‏‎ (66 revisions)
  55. AMS-532 Laboratory Rotations and Journal Club in Computational Biology‏‎ (66 revisions)
  56. Rizzo Lab Weekly Group Meetings‏‎ (64 revisions)
  57. 2024 DOCK tutorial 1 with PDBID 2ITO‏‎ (63 revisions)
  58. SB2012‏‎ (63 revisions)
  59. Cross Docking SB2024 V1 DOCK6.10 A‏‎ (61 revisions)
  60. DOCK VS Development Goals‏‎ (60 revisions)
  61. 2016 AMBER tutorial with Beta Trypsin‏‎ (59 revisions)
  62. Scoring Functions‏‎ (59 revisions)
  63. MD Simulation: Protein in Water‏‎ (58 revisions)
  64. 2011 AMS-535 Fall‏‎ (57 revisions)
  65. 2015 AMBER tutorial with PARP‏‎ (56 revisions)
  66. 2018 DOCK tutorial 2 with PDBID 1C87‏‎ (56 revisions)
  67. 2018 AMBER tutorial with 2nnq‏‎ (54 revisions)
  68. 2019 RCR GROUP MEETING‏‎ (53 revisions)
  69. 2015 RCR GROUP MEETING‏‎ (53 revisions)
  70. 2017 RCR GROUP MEETING‏‎ (52 revisions)
  71. 2019 DOCK tutorial 1 with PDBID 2BXF‏‎ (52 revisions)
  72. 2020 AMBER tutorial with PDBID 3VJK‏‎ (51 revisions)
  73. 2017 DOCK tutorial 2 with PDB 3GPL NEW‏‎ (50 revisions)
  74. 2013 AMS-535 Fall‏‎ (49 revisions)
  75. 2024 DOCK tutorial 3 with PDBID 1Y0X‏‎ (47 revisions)
  76. Database Enrichment SB2024 V1 DOCK6.10 A‏‎ (47 revisions)
  77. 2017 Denovo design tutorial 2 with PDB 4QMZ‏‎ (46 revisions)
  78. DOCK GA Development Goals‏‎ (46 revisions)
  79. AMS-532 Journal Club in Computational Biology‏‎ (46 revisions)
  80. DOCK DN Development Goals‏‎ (46 revisions)
  81. 2011 RCR GROUP MEETING‏‎ (45 revisions)
  82. 2021 AMBER tutorial 3 with PDBID 1S19‏‎ (44 revisions)
  83. 2015-2016 AMS-532 Fall-Spring‏‎ (44 revisions)
  84. De novo Developer Progress‏‎ (44 revisions)
  85. 2012 RCR GROUP MEETING‏‎ (44 revisions)
  86. 2023 AMBER tutorial 3 with PDBID 2P16‏‎ (44 revisions)
  87. 2009-2010 AMS-532 Fall-Spring‏‎ (43 revisions)
  88. 2015 AMS-536 Spring‏‎ (43 revisions)
  89. Pose Reproduction SB2024 V1 DOCK6.10 A‏‎ (42 revisions)
  90. 2011-2012 AMS-532 Fall-Spring‏‎ (41 revisions)
  91. AutoDock4 Pose Reproduction Tutorial‏‎ (41 revisions)
  92. DOCK Tutorials‏‎ (41 revisions)
  93. 2016 AMS-535 Fall‏‎ (40 revisions)
  94. 2020 AMS-536 Spring‏‎ (39 revisions)
  95. 2021 Denovo tutorial 1 with PDBID 1HW9‏‎ (39 revisions)
  96. 2021 AMS-535 Fall‏‎ (38 revisions)
  97. 2019 Covalent docking tutorial 1 with PDB 5VKG‏‎ (38 revisions)
  98. 2018 AMS-535 Fall‏‎ (38 revisions)
  99. 2017 DOCK tutorial 1 with PDB 4QMZ NEW‏‎ (37 revisions)
  100. 2013-2014 AMS-532 Fall-Spring‏‎ (37 revisions)
  101. 2022 AMS-535 Fall‏‎ (36 revisions)
  102. 2025 Denovo tutorial 2 with PDBID 1XMU‏‎ (36 revisions)
  103. 2012 AMS-535 Fall‏‎ (36 revisions)
  104. 2021-2022 AMS-532 Fall-Spring‏‎ (35 revisions)
  105. Virtual Screening Protocol on BlueGene (IGF-IR system)‏‎ (35 revisions)
  106. ZINC15 Database‏‎ (34 revisions)
  107. 2010 AMS-536 Spring‏‎ (34 revisions)
  108. 2015 AMS-535 Fall‏‎ (33 revisions)
  109. 2014 RCR GROUP MEETING‏‎ (32 revisions)
  110. 2024 AMBER tutorial 2 with PDBID 1NDV‏‎ (32 revisions)
  111. SB2010‏‎ (32 revisions)
  112. Amber on Seawulf (compilation)‏‎ (32 revisions)
  113. 2019 Covalent docking tutorial 1 with PDB 2VKG‏‎ (31 revisions)
  114. 2014 AMS-535 Fall‏‎ (31 revisions)
  115. DOCK VS Tutorials‏‎ (30 revisions)
  116. 2013 RCR GROUP MEETING‏‎ (30 revisions)
  117. 2024-2025 AMS-532 Fall-Spring‏‎ (30 revisions)
  118. 2016-2017 AMS-532 Fall-Spring‏‎ (29 revisions)
  119. Tutorials‏‎ (29 revisions)
  120. 2019-2020 AMS-532 Fall-Spring‏‎ (29 revisions)
  121. 2017 AMS-535 Fall‏‎ (29 revisions)
  122. 2022 AMS-536 Spring‏‎ (28 revisions)
  123. 2011 DOCK tutorial with Streptavidin‏‎ (28 revisions)
  124. Parameter List‏‎ (28 revisions)
  125. 2013 AMS-536 Spring‏‎ (27 revisions)
  126. Analysis Tools Repository‏‎ (27 revisions)
  127. 2014 AMS-536 Spring‏‎ (27 revisions)
  128. 2021 Denovo tutorial 3 with PDBID 1S19‏‎ (27 revisions)
  129. AMBER Tutorials‏‎ (27 revisions)
  130. 2019 Denovo design tutorial 3 with PDB 3JQZ‏‎ (27 revisions)
  131. 2011 AMS-536 Spring‏‎ (26 revisions)
  132. 2019 AMS-535 Fall‏‎ (26 revisions)
  133. 2020 AMS-536 Spring (original syllabus)‏‎ (26 revisions)
  134. 2016 AMS-536 Spring‏‎ (26 revisions)
  135. Stony Brook Joint Group Meetings in Computational Structural Biology‏‎ (26 revisions)
  136. 2019 Denovo design tutorial 2 with PDB 2P16‏‎ (26 revisions)
  137. 2019 Denovo design tutorial 1 with PDB 2BXF‏‎ (25 revisions)
  138. 2024 AMS-536 Spring‏‎ (25 revisions)
  139. 2018 Denovo design tutorial 1 with PDB 2NNQ‏‎ (24 revisions)
  140. 2023 AMS-536 Spring‏‎ (24 revisions)
  141. 2022 Denovo tutorial 2 with PDBID 4ZUD‏‎ (24 revisions)
  142. 2019 AMBER tutorial with PDBID 2BXF‏‎ (23 revisions)
  143. 2017-2018 AMS-532 Fall-Spring‏‎ (23 revisions)
  144. Main Page‏‎ (22 revisions)
  145. 2021 AMBER tutorial 1 with PDBID 1HW9‏‎ (22 revisions)
  146. 2018-2019 AMS-532 Fall-Spring‏‎ (22 revisions)
  147. 2017 AMBER tutorial with 4qmz‏‎ (22 revisions)
  148. 2012 AMS-536 Spring‏‎ (22 revisions)
  149. 2023 AMBER tutorial 2 with PDBID 3WZE‏‎ (22 revisions)
  150. 2020-2021 AMS-532 Fall-Spring‏‎ (21 revisions)
  151. 2020 Denovo tutorial 4 with PDBID 6UZW‏‎ (21 revisions)
  152. Virtual Screening Protocol‏‎ (21 revisions)
  153. How to purchase compounds for Rizzo lab‏‎ (21 revisions)
  154. 2022 AMBER tutorial 1 with PDBID 6ME2‏‎ (20 revisions)
  155. Make Unique script usage‏‎ (20 revisions)
  156. 2017 Dock tutorial‏‎ (20 revisions)
  157. NAMD Amber inputs‏‎ (20 revisions)
  158. 2024 DOCK GA tutorial 1 with 1NDV‏‎ (20 revisions)
  159. SB2021.v1‏‎ (19 revisions)
  160. 2024 Denovo tutorial 1 with PDBID 2ITO‏‎ (19 revisions)
  161. 2019 AMS-536 Spring‏‎ (19 revisions)
  162. 2023-2024 AMS-532 Fall-Spring‏‎ (19 revisions)
  163. DOCK6 POSE Reproduction‏‎ (19 revisions)
  164. Development Goals Archive‏‎ (18 revisions)
  165. Seawulf Items Needed‏‎ (18 revisions)
  166. 2022 Denovo tutorial 3 with PDBID 1X70‏‎ (18 revisions)
  167. 2022-2023 AMS-532 Fall-Spring‏‎ (18 revisions)
  168. 2014-2015 AMS-532 Fall-Spring‏‎ (17 revisions)
  169. 2023 Denovo tutorial 3 with PDBID 2P16‏‎ (17 revisions)
  170. 2022 RCR GROUP MEETING‏‎ (17 revisions)
  171. DGHYD‏‎ (17 revisions)
  172. 2016 RCR GROUP MEETING‏‎ (16 revisions)
  173. Formating your Thesis‏‎ (16 revisions)
  174. 2016 AMBER tutorial with Thrombin‏‎ (15 revisions)
  175. Benchmarking Protocols and Lab SOPs‏‎ (15 revisions)
  176. 2025 DOCK GA tutorial 2 with 1XMU‏‎ (15 revisions)
  177. DOCK DN Tutorials‏‎ (15 revisions)
  178. Seawulf Cluster Assessment‏‎ (14 revisions)
  179. 2022 Denovo tutorial 1 with PDBID 6ME2‏‎ (14 revisions)
  180. 2020 DOCK tutorial 2 with PDBID 2GQG‏‎ (14 revisions)
  181. 2020 DOCK tutorial 2 with PDBID XXXX‏‎ (14 revisions)
  182. 2018 AMS-536 Spring‏‎ (14 revisions)
  183. 2020 Denovo tutorial 1 with PDBID 3VJK‏‎ (14 revisions)
  184. 2021 Denovo tutorial 4 with PDBID 1EFY‏‎ (14 revisions)
  185. 2020 Denovo tutorial 3 with PDBID 4F4P‏‎ (13 revisions)
  186. CONGA Parameter List‏‎ (13 revisions)
  187. Energy Scoring Method in Grid‏‎ (13 revisions)
  188. 2012-2013 AMS-532 Fall-Spring‏‎ (13 revisions)
  189. 2018 AMBER tutorial with 1c87‏‎ (13 revisions)
  190. Useful Slurm Commands‏‎ (13 revisions)
  191. DOCK Release Objectives‏‎ (13 revisions)
  192. Per-residue energy decompositions‏‎ (13 revisions)
  193. BASH scripting‏‎ (13 revisions)
  194. 2018 Denovo design tutorial 2 with PDB 1C87‏‎ (12 revisions)
  195. 2018 RCR GROUP MEETING‏‎ (12 revisions)
  196. Rizzo Lab General Information for Lab Members‏‎ (12 revisions)
  197. De novo Benchmarking‏‎ (12 revisions)
  198. 2024 AMBER tutorial 3 with PDBID 1Y0X‏‎ (12 revisions)
  199. Server Administration‏‎ (12 revisions)
  200. Nonstandard residues prep‏‎ (11 revisions)
  201. 2017 Denovo refine tutorial with PDB 1BJU‏‎ (11 revisions)
  202. Benchmarking Protocols and Results‏‎ (11 revisions)
  203. Stupid awk tricks‏‎ (11 revisions)
  204. 3D Analog Library Generation Using Pubchem and Zinc‏‎ (11 revisions)
  205. Activating your Seawulf Account‏‎ (11 revisions)
  206. Joint Group Meeting 2010‏‎ (11 revisions)
  207. Joint Group Meeting 2011‏‎ (11 revisions)
  208. PBS Queue‏‎ (10 revisions)
  209. Apply for cluster‏‎ (10 revisions)
  210. Benchmarking Results‏‎ (10 revisions)
  211. 2019 DOCK GA tutorial 1 with 2NNQ‏‎ (10 revisions)
  212. Compiling GROMACS on Cluster‏‎ (10 revisions)
  213. 2010 LAB‏‎ (10 revisions)
  214. GRD-500 Integrity in Science‏‎ (9 revisions)
  215. Chimera‏‎ (9 revisions)
  216. DOCK GA Tutorials‏‎ (9 revisions)
  217. Unix‏‎ (9 revisions)
  218. MATLAB‏‎ (9 revisions)
  219. Past Announcements‏‎ (9 revisions)
  220. AutoDock Vina Pose Reproduction Tutorial‏‎ (9 revisions)
  221. DOCK Denovo‏‎ (9 revisions)
  222. MPICH‏‎ (9 revisions)
  223. Torsion environment‏‎ (8 revisions)
  224. DOCK Benchmarking‏‎ (8 revisions)
  225. DOCK CV Benchmarking‏‎ (8 revisions)
  226. 2025 AMS-536 Spring‏‎ (8 revisions)
  227. Small Molecule Evolution (DOCK GA)‏‎ (8 revisions)
  228. Release‏‎ (8 revisions)
  229. AutoDock4 Benchmark Results‏‎ (8 revisions)
  230. DOCK VS Benchmarking‏‎ (8 revisions)
  231. DOCK Denovo Refinement‏‎ (8 revisions)
  232. 2022 AMBER tutorial 3 with PDBID 1X70‏‎ (7 revisions)
  233. Fragment Library Generation‏‎ (7 revisions)
  234. Legacy Info‏‎ (7 revisions)
  235. 2024 AMBER tutorial 1 with PDBID 2ITO‏‎ (7 revisions)
  236. MD Simulation: Protein in Water (Pt. 2)‏‎ (7 revisions)
  237. 2008 DOCK tutorial with Gleevec‏‎ (7 revisions)
  238. MOE‏‎ (7 revisions)
  239. Testset Objectives‏‎ (7 revisions)
  240. Example of an Input file‏‎ (6 revisions)
  241. De Novo Design (DOCK DN)‏‎ (6 revisions)
  242. Automated Families generation from the Protein Databank‏‎ (6 revisions)
  243. 2017 AMS-536 Spring‏‎ (6 revisions)
  244. Dell 5110cn Printer‏‎ (6 revisions)
  245. 2017 Denovo design tutorial 1 with PDB 1BJU‏‎ (5 revisions)
  246. Vi‏‎ (5 revisions)
  247. Xmgrace‏‎ (5 revisions)
  248. Joint Group Meeting 2013‏‎ (5 revisions)
  249. C Shell Scripting‏‎ (5 revisions)
  250. 2024 Denovo tutorial 3 with PDBID 1Y0X‏‎ (5 revisions)

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