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  1. 2025 DOCK tutorial 2 with PDBID 1XMU‏‎ (75 revisions)
  2. Developer's Info Goals‏‎ (73 revisions)
  3. AMS-536 Molecular Modeling of Biological Molecules‏‎ (72 revisions)
  4. 2009 AMS-535 Fall‏‎ (66 revisions)
  5. AMS-532 Laboratory Rotations and Journal Club in Computational Biology‏‎ (66 revisions)
  6. Rizzo Lab Weekly Group Meetings‏‎ (64 revisions)
  7. SB2012‏‎ (63 revisions)
  8. 2024 DOCK tutorial 1 with PDBID 2ITO‏‎ (63 revisions)
  9. Cross Docking SB2024 V1 DOCK6.10 A‏‎ (61 revisions)
  10. DOCK VS Development Goals‏‎ (60 revisions)
  11. 2016 AMBER tutorial with Beta Trypsin‏‎ (59 revisions)
  12. Scoring Functions‏‎ (59 revisions)
  13. MD Simulation: Protein in Water‏‎ (58 revisions)
  14. 2011 AMS-535 Fall‏‎ (57 revisions)
  15. 2015 AMBER tutorial with PARP‏‎ (56 revisions)
  16. 2018 DOCK tutorial 2 with PDBID 1C87‏‎ (56 revisions)
  17. 2018 AMBER tutorial with 2nnq‏‎ (54 revisions)
  18. 2019 RCR GROUP MEETING‏‎ (53 revisions)
  19. 2015 RCR GROUP MEETING‏‎ (53 revisions)
  20. 2019 DOCK tutorial 1 with PDBID 2BXF‏‎ (52 revisions)
  21. 2017 RCR GROUP MEETING‏‎ (52 revisions)
  22. 2020 AMBER tutorial with PDBID 3VJK‏‎ (51 revisions)
  23. 2017 DOCK tutorial 2 with PDB 3GPL NEW‏‎ (50 revisions)
  24. 2013 AMS-535 Fall‏‎ (49 revisions)
  25. 2024 DOCK tutorial 3 with PDBID 1Y0X‏‎ (47 revisions)
  26. Database Enrichment SB2024 V1 DOCK6.10 A‏‎ (47 revisions)
  27. 2017 Denovo design tutorial 2 with PDB 4QMZ‏‎ (46 revisions)
  28. DOCK GA Development Goals‏‎ (46 revisions)
  29. AMS-532 Journal Club in Computational Biology‏‎ (46 revisions)
  30. DOCK DN Development Goals‏‎ (46 revisions)
  31. 2011 RCR GROUP MEETING‏‎ (45 revisions)
  32. 2015-2016 AMS-532 Fall-Spring‏‎ (44 revisions)
  33. 2012 RCR GROUP MEETING‏‎ (44 revisions)
  34. De novo Developer Progress‏‎ (44 revisions)
  35. 2023 AMBER tutorial 3 with PDBID 2P16‏‎ (44 revisions)
  36. 2021 AMBER tutorial 3 with PDBID 1S19‏‎ (44 revisions)
  37. 2009-2010 AMS-532 Fall-Spring‏‎ (43 revisions)
  38. 2015 AMS-536 Spring‏‎ (43 revisions)
  39. Pose Reproduction SB2024 V1 DOCK6.10 A‏‎ (42 revisions)
  40. DOCK Tutorials‏‎ (41 revisions)
  41. 2011-2012 AMS-532 Fall-Spring‏‎ (41 revisions)
  42. AutoDock4 Pose Reproduction Tutorial‏‎ (41 revisions)
  43. 2016 AMS-535 Fall‏‎ (40 revisions)
  44. 2021 Denovo tutorial 1 with PDBID 1HW9‏‎ (39 revisions)
  45. 2020 AMS-536 Spring‏‎ (39 revisions)
  46. 2018 AMS-535 Fall‏‎ (38 revisions)
  47. 2021 AMS-535 Fall‏‎ (38 revisions)
  48. 2019 Covalent docking tutorial 1 with PDB 5VKG‏‎ (38 revisions)
  49. 2017 DOCK tutorial 1 with PDB 4QMZ NEW‏‎ (37 revisions)
  50. 2013-2014 AMS-532 Fall-Spring‏‎ (37 revisions)
  51. 2012 AMS-535 Fall‏‎ (36 revisions)
  52. 2022 AMS-535 Fall‏‎ (36 revisions)
  53. 2025 Denovo tutorial 2 with PDBID 1XMU‏‎ (36 revisions)
  54. 2021-2022 AMS-532 Fall-Spring‏‎ (35 revisions)
  55. Virtual Screening Protocol on BlueGene (IGF-IR system)‏‎ (35 revisions)
  56. 2010 AMS-536 Spring‏‎ (34 revisions)
  57. ZINC15 Database‏‎ (34 revisions)
  58. 2015 AMS-535 Fall‏‎ (33 revisions)
  59. 2024 AMBER tutorial 2 with PDBID 1NDV‏‎ (32 revisions)
  60. 2014 RCR GROUP MEETING‏‎ (32 revisions)
  61. SB2010‏‎ (32 revisions)
  62. Amber on Seawulf (compilation)‏‎ (32 revisions)
  63. 2019 Covalent docking tutorial 1 with PDB 2VKG‏‎ (31 revisions)
  64. 2014 AMS-535 Fall‏‎ (31 revisions)
  65. DOCK VS Tutorials‏‎ (30 revisions)
  66. 2013 RCR GROUP MEETING‏‎ (30 revisions)
  67. 2024-2025 AMS-532 Fall-Spring‏‎ (30 revisions)
  68. 2017 AMS-535 Fall‏‎ (29 revisions)
  69. 2016-2017 AMS-532 Fall-Spring‏‎ (29 revisions)
  70. 2019-2020 AMS-532 Fall-Spring‏‎ (29 revisions)
  71. Tutorials‏‎ (29 revisions)
  72. 2022 AMS-536 Spring‏‎ (28 revisions)
  73. 2011 DOCK tutorial with Streptavidin‏‎ (28 revisions)
  74. Parameter List‏‎ (28 revisions)
  75. AMBER Tutorials‏‎ (27 revisions)
  76. 2021 Denovo tutorial 3 with PDBID 1S19‏‎ (27 revisions)
  77. 2019 Denovo design tutorial 3 with PDB 3JQZ‏‎ (27 revisions)
  78. 2013 AMS-536 Spring‏‎ (27 revisions)
  79. Analysis Tools Repository‏‎ (27 revisions)
  80. 2014 AMS-536 Spring‏‎ (27 revisions)
  81. 2019 Denovo design tutorial 2 with PDB 2P16‏‎ (26 revisions)
  82. 2011 AMS-536 Spring‏‎ (26 revisions)
  83. 2019 AMS-535 Fall‏‎ (26 revisions)
  84. 2020 AMS-536 Spring (original syllabus)‏‎ (26 revisions)
  85. 2016 AMS-536 Spring‏‎ (26 revisions)
  86. Stony Brook Joint Group Meetings in Computational Structural Biology‏‎ (26 revisions)
  87. 2019 Denovo design tutorial 1 with PDB 2BXF‏‎ (25 revisions)
  88. 2024 AMS-536 Spring‏‎ (25 revisions)
  89. 2018 Denovo design tutorial 1 with PDB 2NNQ‏‎ (24 revisions)
  90. 2023 AMS-536 Spring‏‎ (24 revisions)
  91. 2022 Denovo tutorial 2 with PDBID 4ZUD‏‎ (24 revisions)
  92. 2017-2018 AMS-532 Fall-Spring‏‎ (23 revisions)
  93. 2019 AMBER tutorial with PDBID 2BXF‏‎ (23 revisions)
  94. 2012 AMS-536 Spring‏‎ (22 revisions)
  95. 2017 AMBER tutorial with 4qmz‏‎ (22 revisions)
  96. 2023 AMBER tutorial 2 with PDBID 3WZE‏‎ (22 revisions)
  97. Main Page‏‎ (22 revisions)
  98. 2021 AMBER tutorial 1 with PDBID 1HW9‏‎ (22 revisions)
  99. 2018-2019 AMS-532 Fall-Spring‏‎ (22 revisions)
  100. 2020-2021 AMS-532 Fall-Spring‏‎ (21 revisions)
  101. 2020 Denovo tutorial 4 with PDBID 6UZW‏‎ (21 revisions)
  102. How to purchase compounds for Rizzo lab‏‎ (21 revisions)
  103. Virtual Screening Protocol‏‎ (21 revisions)
  104. 2024 DOCK GA tutorial 1 with 1NDV‏‎ (20 revisions)
  105. 2022 AMBER tutorial 1 with PDBID 6ME2‏‎ (20 revisions)
  106. Make Unique script usage‏‎ (20 revisions)
  107. 2017 Dock tutorial‏‎ (20 revisions)
  108. NAMD Amber inputs‏‎ (20 revisions)
  109. 2023-2024 AMS-532 Fall-Spring‏‎ (19 revisions)
  110. DOCK6 POSE Reproduction‏‎ (19 revisions)
  111. SB2021.v1‏‎ (19 revisions)
  112. 2024 Denovo tutorial 1 with PDBID 2ITO‏‎ (19 revisions)
  113. 2019 AMS-536 Spring‏‎ (19 revisions)
  114. 2022 Denovo tutorial 3 with PDBID 1X70‏‎ (18 revisions)
  115. 2022-2023 AMS-532 Fall-Spring‏‎ (18 revisions)
  116. Development Goals Archive‏‎ (18 revisions)
  117. Seawulf Items Needed‏‎ (18 revisions)
  118. 2022 RCR GROUP MEETING‏‎ (17 revisions)
  119. DGHYD‏‎ (17 revisions)
  120. 2014-2015 AMS-532 Fall-Spring‏‎ (17 revisions)
  121. 2023 Denovo tutorial 3 with PDBID 2P16‏‎ (17 revisions)
  122. Formating your Thesis‏‎ (16 revisions)
  123. 2016 RCR GROUP MEETING‏‎ (16 revisions)
  124. DOCK DN Tutorials‏‎ (15 revisions)
  125. 2016 AMBER tutorial with Thrombin‏‎ (15 revisions)
  126. Benchmarking Protocols and Lab SOPs‏‎ (15 revisions)
  127. 2025 DOCK GA tutorial 2 with 1XMU‏‎ (15 revisions)
  128. 2020 DOCK tutorial 2 with PDBID XXXX‏‎ (14 revisions)
  129. 2018 AMS-536 Spring‏‎ (14 revisions)
  130. 2020 Denovo tutorial 1 with PDBID 3VJK‏‎ (14 revisions)
  131. 2021 Denovo tutorial 4 with PDBID 1EFY‏‎ (14 revisions)
  132. Seawulf Cluster Assessment‏‎ (14 revisions)
  133. 2022 Denovo tutorial 1 with PDBID 6ME2‏‎ (14 revisions)
  134. 2020 DOCK tutorial 2 with PDBID 2GQG‏‎ (14 revisions)
  135. DOCK Release Objectives‏‎ (13 revisions)
  136. 2018 AMBER tutorial with 1c87‏‎ (13 revisions)
  137. Per-residue energy decompositions‏‎ (13 revisions)
  138. BASH scripting‏‎ (13 revisions)
  139. Useful Slurm Commands‏‎ (13 revisions)
  140. CONGA Parameter List‏‎ (13 revisions)
  141. 2020 Denovo tutorial 3 with PDBID 4F4P‏‎ (13 revisions)
  142. Energy Scoring Method in Grid‏‎ (13 revisions)
  143. 2012-2013 AMS-532 Fall-Spring‏‎ (13 revisions)
  144. 2024 AMBER tutorial 3 with PDBID 1Y0X‏‎ (12 revisions)
  145. De novo Benchmarking‏‎ (12 revisions)
  146. Server Administration‏‎ (12 revisions)
  147. 2018 Denovo design tutorial 2 with PDB 1C87‏‎ (12 revisions)
  148. Rizzo Lab General Information for Lab Members‏‎ (12 revisions)
  149. 2018 RCR GROUP MEETING‏‎ (12 revisions)
  150. 3D Analog Library Generation Using Pubchem and Zinc‏‎ (11 revisions)
  151. Activating your Seawulf Account‏‎ (11 revisions)
  152. Joint Group Meeting 2010‏‎ (11 revisions)
  153. Joint Group Meeting 2011‏‎ (11 revisions)
  154. Nonstandard residues prep‏‎ (11 revisions)
  155. 2017 Denovo refine tutorial with PDB 1BJU‏‎ (11 revisions)
  156. Benchmarking Protocols and Results‏‎ (11 revisions)
  157. Stupid awk tricks‏‎ (11 revisions)
  158. Compiling GROMACS on Cluster‏‎ (10 revisions)
  159. 2010 LAB‏‎ (10 revisions)
  160. Apply for cluster‏‎ (10 revisions)
  161. PBS Queue‏‎ (10 revisions)
  162. Benchmarking Results‏‎ (10 revisions)
  163. 2019 DOCK GA tutorial 1 with 2NNQ‏‎ (10 revisions)
  164. Past Announcements‏‎ (9 revisions)
  165. AutoDock Vina Pose Reproduction Tutorial‏‎ (9 revisions)
  166. Unix‏‎ (9 revisions)
  167. DOCK Denovo‏‎ (9 revisions)
  168. MPICH‏‎ (9 revisions)
  169. Chimera‏‎ (9 revisions)
  170. GRD-500 Integrity in Science‏‎ (9 revisions)
  171. DOCK GA Tutorials‏‎ (9 revisions)
  172. MATLAB‏‎ (9 revisions)
  173. DOCK VS Benchmarking‏‎ (8 revisions)
  174. DOCK Denovo Refinement‏‎ (8 revisions)
  175. DOCK Benchmarking‏‎ (8 revisions)
  176. DOCK CV Benchmarking‏‎ (8 revisions)
  177. 2025 AMS-536 Spring‏‎ (8 revisions)
  178. Small Molecule Evolution (DOCK GA)‏‎ (8 revisions)
  179. Release‏‎ (8 revisions)
  180. Torsion environment‏‎ (8 revisions)
  181. AutoDock4 Benchmark Results‏‎ (8 revisions)
  182. 2024 AMBER tutorial 1 with PDBID 2ITO‏‎ (7 revisions)
  183. 2008 DOCK tutorial with Gleevec‏‎ (7 revisions)
  184. MD Simulation: Protein in Water (Pt. 2)‏‎ (7 revisions)
  185. MOE‏‎ (7 revisions)
  186. 2022 AMBER tutorial 3 with PDBID 1X70‏‎ (7 revisions)
  187. Fragment Library Generation‏‎ (7 revisions)
  188. Testset Objectives‏‎ (7 revisions)
  189. Legacy Info‏‎ (7 revisions)
  190. De Novo Design (DOCK DN)‏‎ (6 revisions)
  191. Automated Families generation from the Protein Databank‏‎ (6 revisions)
  192. 2017 AMS-536 Spring‏‎ (6 revisions)
  193. Dell 5110cn Printer‏‎ (6 revisions)
  194. Example of an Input file‏‎ (6 revisions)
  195. Rsync‏‎ (5 revisions)
  196. NOVA (Navigation and Optimization for Virtual Assembly)‏‎ (5 revisions)
  197. Joint Group Meeting 2007-2009‏‎ (5 revisions)
  198. 2017 Denovo design tutorial 1 with PDB 1BJU‏‎ (5 revisions)
  199. Joint Group Meeting 2013‏‎ (5 revisions)
  200. C Shell Scripting‏‎ (5 revisions)
  201. VMD‏‎ (5 revisions)
  202. 2024 Denovo tutorial 3 with PDBID 1Y0X‏‎ (5 revisions)
  203. 2009 RCR GROUP MEETING‏‎ (5 revisions)
  204. Scp files from cluster to NYBlue‏‎ (5 revisions)
  205. Cluster compilations‏‎ (5 revisions)
  206. DOCK GA Parameters‏‎ (5 revisions)
  207. Vi‏‎ (5 revisions)
  208. Xmgrace‏‎ (5 revisions)
  209. 2008-2009 LAB‏‎ (5 revisions)
  210. DOCK GIST Parameters‏‎ (5 revisions)
  211. 2008 AMS-535 Fall‏‎ (5 revisions)
  212. Installing DOCK‏‎ (5 revisions)
  213. Semester Checklist‏‎ (4 revisions)
  214. 2008 RCR GROUP MEETING‏‎ (4 revisions)
  215. SB2011 testset‏‎ (4 revisions)
  216. 2009-2010 GRD-500 Fall-Spring‏‎ (4 revisions)
  217. 2010 RCR GROUP MEETING‏‎ (4 revisions)
  218. DOCK Abbreviations Guide‏‎ (4 revisions)
  219. HIV/AIDS‏‎ (4 revisions)
  220. SLURM‏‎ (4 revisions)
  221. 2009 DOCK tutorial with neuraminidase‏‎ (4 revisions)
  222. DOCK CV Tutorials‏‎ (4 revisions)
  223. LoadLeveler Chain Jobs‏‎ (4 revisions)
  224. 2008 AMS-536 Spring‏‎ (4 revisions)
  225. Rotation students Wiki‏‎ (3 revisions)
  226. AutoDock Vina Benchmark Results‏‎ (3 revisions)
  227. 2008 DOCK tutorial with 1LAH‏‎ (3 revisions)
  228. Example of an Single Molecule Evolution Input file‏‎ (3 revisions)
  229. Additional DOCK6 Information‏‎ (3 revisions)
  230. BlueGene‏‎ (3 revisions)
  231. 2021 Denovo tutorial 2 with PDBID 2ZD1‏‎ (3 revisions)
  232. Advanced Dock Utilities/Information‏‎ (3 revisions)
  233. 2012 GRD-500 Spring‏‎ (3 revisions)
  234. Setting up RSA SecureID token‏‎ (3 revisions)
  235. Unix find‏‎ (3 revisions)
  236. 2009 AMBER tutorial with Trpcage‏‎ (3 revisions)
  237. Joint Group Meeting 2012‏‎ (3 revisions)
  238. SDF to mol2‏‎ (3 revisions)
  239. Fourier fit‏‎ (3 revisions)
  240. RGD‏‎ (3 revisions)
  241. AMS-532 Guidlines‏‎ (3 revisions)
  242. R - Statistical Computing‏‎ (3 revisions)
  243. DOCK CV Input File(s)‏‎ (3 revisions)
  244. 2008 AMBER tutorial‏‎ (3 revisions)
  245. Example of an CONGA Input file‏‎ (3 revisions)
  246. General Dock Utilities‏‎ (3 revisions)
  247. Virtual Screening Compound Ordering SOP‏‎ (3 revisions)
  248. 2018‏‎ (3 revisions)
  249. Sed - Stream Editor in Unix‏‎ (2 revisions)
  250. DOCK DN Parameters‏‎ (2 revisions)
  251. Ubq npt.mdp‏‎ (2 revisions)
  252. Get Job ids to use for llcancel‏‎ (2 revisions)
  253. Ubq nvt.mdp‏‎ (2 revisions)
  254. DOCK DN Utilities‏‎ (2 revisions)
  255. Getting a BNL Account‏‎ (2 revisions)
  256. No t4 step1 inputgen.bash‏‎ (2 revisions)
  257. CONGA‏‎ (2 revisions)
  258. Footprint Plot Visualization‏‎ (2 revisions)
  259. Amber to mol2 (protein)‏‎ (2 revisions)
  260. Ps.m2p‏‎ (2 revisions)
  261. CVS Commands‏‎ (2 revisions)
  262. Pylab‏‎ (2 revisions)
  263. AMS-532: Lab Rotations/Journal Club Guidelines‏‎ (2 revisions)
  264. 2009 AMS-536 Spring‏‎ (2 revisions)
  265. DOCK CV Development Goals‏‎ (2 revisions)
  266. 2017 Denovo refinement tutorial with PDB 1BJU‏‎ (2 revisions)
  267. Valgrind‏‎ (2 revisions)
  268. Making images for publication using vmd‏‎ (2 revisions)
  269. 2014‏‎ (2 revisions)
  270. Ethernet Cables‏‎ (2 revisions)
  271. Testset Protocols‏‎ (2 revisions)
  272. Gdb (GNU Debugger)‏‎ (2 revisions)
  273. Method development‏‎ (2 revisions)
  274. Sphere Generation‏‎ (2 revisions)
  275. DOCK Compilation‏‎ (2 revisions)
  276. 2011 GRD-500 Spring‏‎ (2 revisions)
  277. Lab SOP‏‎ (2 revisions)
  278. 2017a DOCK tutorial‏‎ (2 revisions)
  279. 2010-2011 GRD-500 Fall-Spring‏‎ (2 revisions)
  280. Example of an Ensemble Evolution Input file‏‎ (2 revisions)
  281. ZINC Database‏‎ (2 revisions)
  282. NAMD on Seawulf‏‎ (2 revisions)
  283. De Novo Design‏‎ (2 revisions)
  284. Ubq min.mdp‏‎ (2 revisions)
  285. Genion.mdp‏‎ (2 revisions)
  286. Parameter List/Explanations‏‎ (2 revisions)
  287. Restraint.vmd.script‏‎ (1 revisions)
  288. Submitting BleuGene Jobs‏‎ (1 revisions - redirect page)
  289. Binding Footprint Program‏‎ (1 revisions)
  290. Virtual Screening SOP‏‎ (1 revisions - redirect page)
  291. Installing MSMS for VMD‏‎ (1 revisions)
  292. NAMD tutorial‏‎ (1 revisions)
  293. Restraint01.pdb‏‎ (1 revisions)
  294. AMBER Lipid Tutorials‏‎ (1 revisions)
  295. Submitting BlueGene Jobs‏‎ (1 revisions)
  296. Blocked Standard Error of the Mean‏‎ (1 revisions)
  297. Config‏‎ (1 revisions)
  298. DOCK Tutorial with 1LAH‏‎ (1 revisions - redirect page)
  299. De Novo Design (previously NOVA)‏‎ (1 revisions)
  300. Example scripts‏‎ (1 revisions)
  301. Get time estimate for free blocks‏‎ (1 revisions)
  302. Visiting BNL‏‎ (1 revisions)
  303. Integration.pl‏‎ (1 revisions)
  304. NOVA‏‎ (1 revisions)
  305. Pdb to mol2‏‎ (1 revisions)
  306. Restraint04.pdb‏‎ (1 revisions)
  307. Run.java.csh‏‎ (1 revisions)
  308. Sequence alignment‏‎ (1 revisions)
  309. Advanced Dock Utilities‏‎ (1 revisions)
  310. TESTSET OBJECTIVES‏‎ (1 revisions - redirect page)
  311. Cross Docking‏‎ (1 revisions - redirect page)
  312. Families in the Protein Databank‏‎ (1 revisions)
  313. Get time for job completion‏‎ (1 revisions)
  314. Vmd.rmsd.csh‏‎ (1 revisions)
  315. MD of Protein in Water‏‎ (1 revisions - redirect page)
  316. Rigid.in‏‎ (1 revisions)
  317. TIMD extraction.py‏‎ (1 revisions)
  318. Automated Family generation from PDB‏‎ (1 revisions)
  319. BlueGene LoadLeveler Jobs with Multiple Steps (Chain Jobs)‏‎ (1 revisions - redirect page)
  320. 01mi.in‏‎ (1 revisions)
  321. 2008 Spring‏‎ (1 revisions)
  322. DOCK DN Utilities/Info‏‎ (1 revisions)
  323. 2010 GRD-500 Spring‏‎ (1 revisions)
  324. De novo DOCK‏‎ (1 revisions)
  325. Flex.in‏‎ (1 revisions)
  326. Unix Tutorial‏‎ (1 revisions - redirect page)
  327. Ways to remove the first line‏‎ (1 revisions)
  328. 2020 DOCK tutorial 4 with PDBID XXXX‏‎ (1 revisions)
  329. Pose Reproduction‏‎ (1 revisions - redirect page)
  330. Ringo.ams.stonybrook.edu‏‎ (1 revisions)
  331. AMBER tricks‏‎ (1 revisions)
  332. TIMD integration.py‏‎ (1 revisions)
  333. 04md.in‏‎ (1 revisions)
  334. Ghostscript‏‎ (1 revisions)
  335. Which Unix Distribution?‏‎ (1 revisions)
  336. MOE Tutorial‏‎ (1 revisions - redirect page)
  337. No t4 step2 equiprod.bash‏‎ (1 revisions)
  338. Rizzo Lab-specific Information and Tutorials‏‎ (1 revisions - redirect page)
  339. AMBER tutorial‏‎ (1 revisions - redirect page)
  340. Setting up insurance through Research Foundation‏‎ (1 revisions)
  341. TIMD integration prep.py‏‎ (1 revisions)
  342. BOSS Pure Liquid Simulation‏‎ (1 revisions - redirect page)
  343. CONGA (CONstruction by Genetic Algorithm)‏‎ (1 revisions)
  344. 2006-2007 AMS-532 Fall-Spring‏‎ (1 revisions)
  345. DOCK VS Parameters‏‎ (1 revisions)
  346. Test Page‏‎ (1 revisions)
  347. Gnuplot‏‎ (1 revisions)
  348. Wiki Editing‏‎ (1 revisions)
  349. 2020 Denovo tutorial 2 with PDBID 2GQG‏‎ (1 revisions)
  350. No t4 step2 min.bash‏‎ (1 revisions)
  351. Rizzo Lab Contact Information‏‎ (1 revisions - redirect page)
  352. AMBER tutorial with Trpcage‏‎ (1 revisions - redirect page)
  353. Setup ssh tunnel to NYBlue fen‏‎ (1 revisions)
  354. Amber to pdb‏‎ (1 revisions)
  355. BOSS Pure Liquid Simulation Notes‏‎ (1 revisions)
  356. 2007-2006 AMS-532 Fall-Spring‏‎ (1 revisions - redirect page)
  357. Test Set Construction‏‎ (1 revisions - redirect page)
  358. Formatting your Thesis‏‎ (1 revisions)
  359. Using Small Ligands with AMBER, complete tutorial‏‎ (1 revisions - redirect page)
  360. Grid.in‏‎ (1 revisions)
  361. With t4 step1 inputgen.bash‏‎ (1 revisions)
  362. No t4 step3 inputgen.bash‏‎ (1 revisions)
  363. Ptraj‏‎ (1 revisions)
  364. Showbox.in‏‎ (1 revisions)
  365. Ams.stonybrook.edu‏‎ (1 revisions)
  366. BOSS pure liquid simulation‏‎ (1 revisions - redirect page)
  367. 2007-2008 AMS-532 Fall-Spring‏‎ (1 revisions)
  368. DOCK GA Developer Progress‏‎ (1 revisions)
  369. 2011-2012 GRD-500 Fall-Spring‏‎ (1 revisions)
  370. DOCK VS Utilities‏‎ (1 revisions)
  371. Using convert command unix‏‎ (1 revisions)
  372. With t4 step2 equiprod.bash‏‎ (1 revisions)
  373. Pure Liquid Simulation‏‎ (1 revisions - redirect page)
  374. Showsph.in‏‎ (1 revisions)
  375. Analog Library - Pubchem & Zinc‏‎ (1 revisions)
  376. Benchmarking‏‎ (1 revisions - redirect page)
  377. 2007-2009‏‎ (1 revisions - redirect page)
  378. DOCK VS Utilities/Info‏‎ (1 revisions)
  379. Disulfide.txt‏‎ (1 revisions)
  380. Test Set Tutorial‏‎ (1 revisions)
  381. 2017 Denovo design tutorial with PDB 1BJU‏‎ (1 revisions)
  382. Hello World‏‎ (1 revisions - redirect page)
  383. With t4 step2 min.bash‏‎ (1 revisions)
  384. Journal Articles from UCSF‏‎ (1 revisions)
  385. Make surface‏‎ (1 revisions)
  386. Octave‏‎ (1 revisions)
  387. Sampling Methods‏‎ (1 revisions)
  388. Simple Protein in Water MD‏‎ (1 revisions - redirect page)
  389. Benchmarking Lab SOP and Results‏‎ (1 revisions - redirect page)
  390. Cancer‏‎ (1 revisions)
  391. 2008-2007 AMS-532 Fall-Spring‏‎ (1 revisions - redirect page)
  392. DOCK GA Input File(s)‏‎ (1 revisions)
  393. DOCK tutorial‏‎ (1 revisions - redirect page)
  394. Drug-like organic molecules‏‎ (1 revisions)
  395. Test Set Tutorial V1‏‎ (1 revisions - redirect page)
  396. Free Energy of Hydration Test-set‏‎ (1 revisions - redirect page)
  397. VMD tutorial‏‎ (1 revisions - redirect page)
  398. Histograms in R‏‎ (1 revisions)
  399. With t4 step3 inputgen.bash‏‎ (1 revisions)
  400. Lab-designed code and programs‏‎ (1 revisions)
  401. Making images for publication‏‎ (1 revisions)
  402. Optimize Polar Hydrogens‏‎ (1 revisions)
  403. Slick awk tricks‏‎ (1 revisions)
  404. Announcements: Fall 2013‏‎ (1 revisions)
  405. Benchmarking Lab SOPs‏‎ (1 revisions - redirect page)
  406. 2008-2009‏‎ (1 revisions - redirect page)
  407. DOCK GA Parameter List‏‎ (1 revisions)
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