Long pages
Showing below up to 458 results in range #1 to #458.
View (previous 500) (next 500) (20 | 50 | 100 | 250 | 500).
- (hist) 2025 DOCK tutorial 1 with PDBID 1O86 [98,462 bytes]
- (hist) 2023 DOCK tutorial 2 with PDBID 3WZE [75,627 bytes]
- (hist) 2023 DOCK tutorial 1 with PDBID 4S0V [74,394 bytes]
- (hist) 2024 DOCK tutorial 1 with PDBID 2ITO [73,138 bytes]
- (hist) 2020 DOCK tutorial 1 with PDBID 3VJK [69,212 bytes]
- (hist) 2022 DOCK tutorial 1 with PDBID 6ME2 [67,764 bytes]
- (hist) 2021 DOCK tutorial 1 with PDBID 1HW9 [67,733 bytes]
- (hist) 2017 DOCK tutorial 1 with PDB 4QMZ NEW [66,933 bytes]
- (hist) 2021 DOCK tutorial 3 with PDBID 1S19 [63,778 bytes]
- (hist) 2020 DOCK tutorial 2 with PDBID 2GQG [62,445 bytes]
- (hist) 2022 DOCK tutorial 2 with PDBID 4ZUD [60,340 bytes]
- (hist) 2023 DOCK tutorial 3 with PDBID 2P16 [60,125 bytes]
- (hist) 2020 DOCK tutorial 3 with PDBID 4F4P [58,602 bytes]
- (hist) 2019 DOCK tutorial 2 with PDBID 2P16 [57,855 bytes]
- (hist) 2019 DOCK tutorial 3 with PDBID 3JQZ [56,696 bytes]
- (hist) 2018 DOCK tutorial 2 with PDBID 1C87 [55,817 bytes]
- (hist) 2012 DOCK tutorial with Streptavidin [55,727 bytes]
- (hist) 2024 DOCK tutorial 2 with PDBID 1NDV [55,673 bytes]
- (hist) 2021 DOCK tutorial 4 with PDBID 1EFY [54,683 bytes]
- (hist) 2022 DOCK tutorial 3 with PDBID 1X70 [54,278 bytes]
- (hist) 2018 DOCK tutorial 1 with PDBID 2NNQ [53,597 bytes]
- (hist) 2022 AMS-535 Fall [53,298 bytes]
- (hist) 2021 AMS-535 Fall [52,291 bytes]
- (hist) 2024 DOCK tutorial 3 with PDBID 1Y0X [51,736 bytes]
- (hist) 2012 AMBER Tutorial with Biotin and Streptavidin [50,704 bytes]
- (hist) 2020 AMS-535 Fall [50,685 bytes]
- (hist) 2020 DOCK tutorial 4 with PDBID 6UZW [49,697 bytes]
- (hist) 2023 AMS-535 Fall [49,141 bytes]
- (hist) 2017 DOCK tutorial 2 with PDB 3GPL NEW [46,100 bytes]
- (hist) 2016 DOCK tutorial with Beta Trypsin [44,999 bytes]
- (hist) 2017 Denovo design tutorial 2 with PDB 4QMZ [44,860 bytes]
- (hist) 2017 Denovo design tutorial with PDB 1BJU [41,621 bytes]
- (hist) DOCK Denovo Run [41,595 bytes]
- (hist) 2017 Denovo design tutorial 1 with PDB 1BJU [41,458 bytes]
- (hist) 2014 DOCK tutorial with HIV Protease [41,249 bytes]
- (hist) 2011 AMBER Tutorial with Biotin and Streptavidin [40,962 bytes]
- (hist) 2024 AMS-535 Fall [40,555 bytes]
- (hist) 2023 Denovo tutorial 2 with PDBID 3WZE [40,307 bytes]
- (hist) 2019 Denovo design tutorial 1 with PDB 2BXF [39,711 bytes]
- (hist) 2018 Denovo design tutorial 1 with PDB 2NNQ [37,516 bytes]
- (hist) 2013 AMBER Tutorial with UMP and OMP [36,903 bytes]
- (hist) 2023 Denovo tutorial 1 with PDBID 4S0V [36,043 bytes]
- (hist) 2010 AMBER Tutorial with Biotin and Streptavidin [35,122 bytes]
- (hist) 2019 DOCK tutorial 1 with PDBID 2BXF [34,756 bytes]
- (hist) 2024 Denovo tutorial 1 with PDBID 2ITO [34,649 bytes]
- (hist) 2013 DOCK tutorial with Orotodine Monophosphate Decarboxylase [33,738 bytes]
- (hist) 2014 AMBER tutorial with HIV Protease [33,535 bytes]
- (hist) 2018 AMBER tutorial with 2nnq [33,318 bytes]
- (hist) 2019 AMBER tutorial with PDBID 2BXF [32,977 bytes]
- (hist) 2009 DOCK tutorial with neuraminidase [32,930 bytes]
- (hist) 2015 DOCK tutorial with Poly(ADP-ribose) polymerase (PARP) [32,770 bytes]
- (hist) 2021 Denovo tutorial 4 with PDBID 1EFY [32,053 bytes]
- (hist) 2019 Denovo design tutorial 3 with PDB 3JQZ [31,869 bytes]
- (hist) 2024 Denovo tutorial 3 with PDBID 1Y0X [31,165 bytes]
- (hist) 2020 Denovo tutorial 4 with PDBID 6UZW [31,104 bytes]
- (hist) 2023 AMBER tutorial 1 with PDBID 4S0V [30,469 bytes]
- (hist) 2024 AMBER tutorial 3 with PDBID 1Y0X [29,825 bytes]
- (hist) 2011 AMS-535 Fall [28,922 bytes]
- (hist) 2009 AMS-535 Fall [28,510 bytes]
- (hist) 2018 AMS-535 Fall [28,463 bytes]
- (hist) 2019 AMS-535 Fall [28,417 bytes]
- (hist) 2012 AMS-535 Fall [28,351 bytes]
- (hist) 2010 AMS-535 Fall [28,065 bytes]
- (hist) 2017 AMBER tutorial with 4qmz [27,626 bytes]
- (hist) 2017 AMS-535 Fall [27,489 bytes]
- (hist) 2019 Denovo design tutorial 2 with PDB 2P16 [27,260 bytes]
- (hist) 2016 AMS-535 Fall [27,092 bytes]
- (hist) 2020 Denovo tutorial 2 with PDBID 2GQG [26,981 bytes]
- (hist) 2008 AMS-535 Fall [26,934 bytes]
- (hist) 2021 Denovo tutorial 2 with PDBID 2ZD1 [26,895 bytes]
- (hist) 2023 AMBER tutorial 3 with PDBID 2P16 [26,856 bytes]
- (hist) 2015 AMS-535 Fall [26,374 bytes]
- (hist) 2014 AMS-535 Fall [25,584 bytes]
- (hist) 2015 AMBER tutorial with PARP [25,411 bytes]
- (hist) 2009 AMBER tutorial with Trpcage [25,374 bytes]
- (hist) 2013 AMS-535 Fall [25,104 bytes]
- (hist) 2024 AMBER tutorial 2 with PDBID 1NDV [24,954 bytes]
- (hist) 2021 Denovo tutorial 3 with PDBID 1S19 [24,817 bytes]
- (hist) 2025 Denovo tutorial 2 with PDBID 1XMU [24,699 bytes]
- (hist) 2021 AMBER tutorial 3 with PDBID 1S19 [24,652 bytes]
- (hist) 2021 AMBER tutorial 1 with PDBID 1HW9 [24,585 bytes]
- (hist) 2022 AMBER tutorial 1 with PDBID 6ME2 [24,022 bytes]
- (hist) 2023 Denovo tutorial 3 with PDBID 2P16 [23,889 bytes]
- (hist) 2018 Denovo design tutorial 2 with PDB 1C87 [23,409 bytes]
- (hist) 2016 AMBER tutorial with Beta Trypsin [23,257 bytes]
- (hist) 2022 AMBER tutorial 3 with PDBID 1X70 [22,748 bytes]
- (hist) 2010 DOCK tutorial with Streptavidin [22,311 bytes]
- (hist) 2020 AMS-536 Spring (revised syllabus) [22,302 bytes]
- (hist) 2023 AMBER tutorial 2 with PDBID 3WZE [22,084 bytes]
- (hist) 2018 AMBER tutorial with 1c87 [21,865 bytes]
- (hist) Scoring Functions [20,950 bytes]
- (hist) MD Simulation: Protein in Water (Pt. 2) [20,848 bytes]
- (hist) MD Simulation: Protein in Water [20,691 bytes]
- (hist) Joe and Brian de novo stuff [20,526 bytes]
- (hist) 2011 DOCK tutorial with Streptavidin [20,494 bytes]
- (hist) 2024 AMBER tutorial 1 with PDBID 2ITO [20,208 bytes]
- (hist) 2023 AMS-536 Spring [20,028 bytes]
- (hist) 2022-2023 AMS-532 Fall-Spring [19,968 bytes]
- (hist) 2021-2022 AMS-532 Fall-Spring [19,833 bytes]
- (hist) 2023-2024 AMS-532 Fall-Spring [19,724 bytes]
- (hist) 2021 AMS-536 Spring [19,542 bytes]
- (hist) 2024-2025 AMS-532 Fall-Spring [19,331 bytes]
- (hist) 2022 AMS-536 Spring [19,110 bytes]
- (hist) Rizzo Lab Publications [19,058 bytes]
- (hist) 2021 Denovo tutorial 1 with PDBID 1HW9 [18,621 bytes]
- (hist) Virtual Screening Protocol on BlueGene (IGF-IR system) [17,680 bytes]
- (hist) Test Set Construction SB2024 V1 DOCK6.10 A [17,485 bytes]
- (hist) 2020 Denovo tutorial 3 with PDBID 4F4P [17,453 bytes]
- (hist) 2022 Denovo tutorial 2 with PDBID 4ZUD [17,142 bytes]
- (hist) 2020 AMBER tutorial with PDBID 3VJK [17,048 bytes]
- (hist) 2008 AMBER tutorial [15,983 bytes]
- (hist) 2024 AMS-536 Spring [15,549 bytes]
- (hist) 2025 AMS-536 Spring [15,145 bytes]
- (hist) 2022 Denovo tutorial 1 with PDBID 6ME2 [15,136 bytes]
- (hist) Virtual Screening Protocol [15,092 bytes]
- (hist) 2020 Denovo tutorial 1 with PDBID 3VJK [14,772 bytes]
- (hist) AutoDock4 Pose Reproduction Tutorial [14,684 bytes]
- (hist) 2019 Covalent docking tutorial 1 with PDB 5VKG [14,530 bytes]
- (hist) 2008 DOCK tutorial with Gleevec [13,826 bytes]
- (hist) AMS-531 Laboratory Rotations in Computational Biology [13,587 bytes]
- (hist) 2015-2016 AMS-532 Fall-Spring [13,519 bytes]
- (hist) 2025 DOCK tutorial 2 with PDBID 1XMU [13,440 bytes]
- (hist) Nonstandard residues prep [13,437 bytes]
- (hist) 2020 AMS-536 Spring (original syllabus) [13,326 bytes]
- (hist) Developer's Info Goals [13,176 bytes]
- (hist) 2021 DOCK tutorial 2 with PDBID 2ZD1 [13,054 bytes]
- (hist) 2025 DOCK GA tutorial 2 with 1XMU [13,021 bytes]
- (hist) 2017-2018 AMS-532 Fall-Spring [12,719 bytes]
- (hist) 2008 DOCK tutorial with 1LAH [12,435 bytes]
- (hist) 2014-2015 AMS-532 Fall-Spring [12,433 bytes]
- (hist) 2016-2017 AMS-532 Fall-Spring [12,415 bytes]
- (hist) 2024 DOCK GA tutorial 1 with 1NDV [12,380 bytes]
- (hist) AMBER TI Tutorials [12,267 bytes]
- (hist) 2018-2019 AMS-532 Fall-Spring [12,190 bytes]
- (hist) 2013-2014 AMS-532 Fall-Spring [12,134 bytes]
- (hist) NAMD on Seawulf [11,737 bytes]
- (hist) 2019 DOCK GA tutorial 1 with 2NNQ [11,227 bytes]
- (hist) 2011-2012 AMS-532 Fall-Spring [10,608 bytes]
- (hist) SB2010 [10,590 bytes]
- (hist) Genion.mdp [10,324 bytes]
- (hist) 2022 Denovo tutorial 3 with PDBID 1X70 [10,318 bytes]
- (hist) DOCK Denovo Refinement [10,250 bytes]
- (hist) 2020-2021 AMS-532 Fall-Spring [10,200 bytes]
- (hist) Cross Docking SB2024 V1 DOCK6.10 A [10,059 bytes]
- (hist) 2010-2011 AMS-532 Fall-Spring [9,966 bytes]
- (hist) 2017 Denovo refine tutorial with PDB 1BJU [9,943 bytes]
- (hist) 2017 Denovo refinement tutorial with PDB 1BJU [9,678 bytes]
- (hist) Rizzo Lab Research [9,458 bytes]
- (hist) Past Announcements [8,552 bytes]
- (hist) DOCK DN Input File(s) [8,420 bytes]
- (hist) Example of an Input file [8,420 bytes]
- (hist) SB2012 [8,268 bytes]
- (hist) 2012 GRD-500 Spring [8,050 bytes]
- (hist) 2011-2012 GRD-500 Fall-Spring [8,050 bytes]
- (hist) AMS-532 Journal Club in Computational Biology [8,030 bytes]
- (hist) 2019 AMS-536 Spring [7,580 bytes]
- (hist) 2012 AMS-536 Spring [7,543 bytes]
- (hist) DOCK DN Development Goals [7,468 bytes]
- (hist) Amber on Seawulf (compilation) [7,413 bytes]
- (hist) AMS-532 Laboratory Rotations and Journal Club in Computational Biology [7,291 bytes]
- (hist) Example of an CONGA Input file [7,182 bytes]
- (hist) Example of an Single Molecule Evolution Input file [7,181 bytes]
- (hist) Example of an Ensemble Evolution Input file [7,177 bytes]
- (hist) 2015 AMS-536 Spring [7,084 bytes]
- (hist) BASH scripting [7,045 bytes]
- (hist) AutoDock Vina Pose Reproduction Tutorial [7,014 bytes]
- (hist) DOCK VS Benchmarking [6,935 bytes]
- (hist) Per-residue energy decompositions [6,852 bytes]
- (hist) 2018 AMS-536 Spring [6,801 bytes]
- (hist) Testset Protocols [6,770 bytes]
- (hist) De novo Developer Progress [6,743 bytes]
- (hist) 2016 AMS-536 Spring [6,738 bytes]
- (hist) AMS-536 Molecular Modeling of Biological Molecules [6,725 bytes]
- (hist) 2013 RCR GROUP MEETING [6,681 bytes]
- (hist) 2017 AMS-536 Spring [6,673 bytes]
- (hist) 2015 RCR GROUP MEETING [6,566 bytes]
- (hist) AMS-535 Introduction to Computational Structural Biology and Drug Design [6,488 bytes]
- (hist) DOCK Benchmarking [6,458 bytes]
- (hist) 2014 AMS-536 Spring [6,427 bytes]
- (hist) Development Goals Archive [6,382 bytes]
- (hist) 2014 RCR GROUP MEETING [6,358 bytes]
- (hist) 2012 RCR GROUP MEETING [6,357 bytes]
- (hist) Rizzo Lab Members and Contact Information [6,235 bytes]
- (hist) 2010 AMS-536 Spring [5,986 bytes]
- (hist) 2011 AMS-536 Spring [5,905 bytes]
- (hist) Database Enrichment SB2024 V1 DOCK6.10 A [5,882 bytes]
- (hist) 2011 GRD-500 Spring [5,872 bytes]
- (hist) 2010-2011 GRD-500 Fall-Spring [5,872 bytes]
- (hist) 2016 RCR GROUP MEETING [5,862 bytes]
- (hist) 2013 AMS-536 Spring [5,803 bytes]
- (hist) Analysis Tools Repository [5,762 bytes]
- (hist) 2020 DOCK tutorial 2 with PDBID XXXX [5,758 bytes]
- (hist) BOSS Pure Liquid Simulation Notes [5,740 bytes]
- (hist) 2011 RCR GROUP MEETING [5,659 bytes]
- (hist) 2009 AMS-536 Spring [5,638 bytes]
- (hist) Xmgrace [5,581 bytes]
- (hist) 2007-2008 AMS-532 Fall-Spring [5,561 bytes]
- (hist) SB2021.v1 [5,555 bytes]
- (hist) 2017 Dock tutorial [5,467 bytes]
- (hist) Activating your Seawulf Account [5,425 bytes]
- (hist) 2006-2007 AMS-532 Fall-Spring [5,318 bytes]
- (hist) 2017a DOCK tutorial [5,303 bytes]
- (hist) 2008 AMS-536 Spring [5,225 bytes]
- (hist) 2008-2009 AMS-532 Fall-Spring [5,101 bytes]
- (hist) DOCK GA Parameters [5,043 bytes]
- (hist) 2018 [5,026 bytes]
- (hist) DOCK CV Input File(s) [4,925 bytes]
- (hist) 2009-2010 AMS-532 Fall-Spring [4,860 bytes]
- (hist) Pose Reproduction SB2024 V1 DOCK6.10 A [4,829 bytes]
- (hist) DOCK GA Parameter List [4,724 bytes]
- (hist) CONGA Parameter List [4,724 bytes]
- (hist) GRD-500 Integrity in Science [4,589 bytes]
- (hist) Restraint01.pdb [4,561 bytes]
- (hist) Restraint04.pdb [4,558 bytes]
- (hist) Virtual Screening Compound Ordering SOP [4,498 bytes]
- (hist) RGD [4,424 bytes]
- (hist) 2012-2013 AMS-532 Fall-Spring [4,340 bytes]
- (hist) Flex.in [4,327 bytes]
- (hist) DOCK6 POSE Reproduction [4,323 bytes]
- (hist) SLURM [4,319 bytes]
- (hist) Ubq npt.mdp [4,249 bytes]
- (hist) Ubq md.mdp [4,141 bytes]
- (hist) Automated Family generation from PDB [4,021 bytes]
- (hist) Automated Families generation from the Protein Databank [4,021 bytes]
- (hist) Ubq nvt.mdp [3,999 bytes]
- (hist) TIMD extraction.py [3,888 bytes]
- (hist) DOCK GA Development Goals [3,840 bytes]
- (hist) Compiling GROMACS on Cluster [3,789 bytes]
- (hist) PBS Queue [3,567 bytes]
- (hist) 01mi.in [3,552 bytes]
- (hist) Analog Library - Pubchem & Zinc [3,493 bytes]
- (hist) 3D Analog Library Generation Using Pubchem and Zinc [3,493 bytes]
- (hist) Other Meetings [3,489 bytes]
- (hist) Apply for cluster [3,485 bytes]
- (hist) Rigid.in [3,481 bytes]
- (hist) 04md.in [3,478 bytes]
- (hist) DOCK DN Benchmarking [3,441 bytes]
- (hist) De novo Benchmarking [3,441 bytes]
- (hist) DOCK VS Development Goals [3,421 bytes]
- (hist) 2019 RCR GROUP MEETING [3,400 bytes]
- (hist) 2019-2020 AMS-532 Fall-Spring [3,260 bytes]
- (hist) Chimera [3,255 bytes]
- (hist) With t4 step3 inputgen.bash [3,132 bytes]
- (hist) With t4 step1 inputgen.bash [3,130 bytes]
- (hist) No t4 step3 inputgen.bash [3,126 bytes]
- (hist) No t4 step1 inputgen.bash [3,120 bytes]
- (hist) Parameter List [3,030 bytes]
- (hist) DOCK DN Parameters [3,028 bytes]
- (hist) Setup ssh tunnel to NYBlue fen [2,802 bytes]
- (hist) Scp files from cluster to NYBlue [2,791 bytes]
- (hist) TIMD integration.py [2,731 bytes]
- (hist) Fragment Library Generation [2,653 bytes]
- (hist) 2017 RCR GROUP MEETING [2,639 bytes]
- (hist) DOCK Installation [2,577 bytes]
- (hist) Installing DOCK [2,577 bytes]
- (hist) Run.java.csh [2,566 bytes]
- (hist) Formatting your Thesis [2,557 bytes]
- (hist) Formating your Thesis [2,557 bytes]
- (hist) Joint Group Meeting 2007-2009 [2,541 bytes]
- (hist) AutoDock4 Benchmark Results [2,506 bytes]
- (hist) With t4 step2 equiprod.bash [2,499 bytes]
- (hist) No t4 step2 equiprod.bash [2,493 bytes]
- (hist) Setting up RSA SecureID token [2,470 bytes]
- (hist) Vi [2,466 bytes]
- (hist) NAMD Amber inputs [2,405 bytes]
- (hist) Seawulf Items Needed [2,402 bytes]
- (hist) Stony Brook Joint Group Meetings in Computational Structural Biology [2,397 bytes]
- (hist) DOCK VS Tutorials [2,378 bytes]
- (hist) MATLAB [2,365 bytes]
- (hist) Apply for NYBlue [2,331 bytes]
- (hist) Server Administration [2,329 bytes]
- (hist) MPICH [2,313 bytes]
- (hist) Rizzo Lab Weekly Group Meetings [2,287 bytes]
- (hist) Make Unique script usage [2,255 bytes]
- (hist) Families in the Protein Databank [2,247 bytes]
- (hist) Slick awk tricks [2,188 bytes]
- (hist) Stupid awk tricks [2,188 bytes]
- (hist) Ubq min.mdp [2,155 bytes]
- (hist) Cluster compilations [2,141 bytes]
- (hist) AMS-532 Guidlines [2,117 bytes]
- (hist) TIMD integration prep.py [2,100 bytes]
- (hist) 200 Codes DoorDash Gift Card Code Generator Unused 2024 Update No Human Verification [2,069 bytes]
- (hist) AMS-532: Lab Rotations/Journal Club Guidelines [2,065 bytes]
- (hist) Integration.pl [2,056 bytes]
- (hist) DGHYD [2,052 bytes]
- (hist) Unix [2,049 bytes]
- (hist) Rizzo Lab Information and Tutorials [2,009 bytes]
- (hist) Rsync [1,987 bytes]
- (hist) Announcements: Fall 2013 [1,976 bytes]
- (hist) 2009 RCR GROUP MEETING [1,878 bytes]
- (hist) Sequence alignment [1,873 bytes]
- (hist) Ps.m2p [1,823 bytes]
- (hist) Sampling Methods [1,814 bytes]
- (hist) Useful Slurm Commands [1,813 bytes]
- (hist) 2022 RCR GROUP MEETING [1,737 bytes]
- (hist) Dell 5110cn Printer [1,700 bytes]
- (hist) CVS Commands [1,677 bytes]
- (hist) Fourier fit [1,555 bytes]
- (hist) How to purchase compounds for Rizzo lab [1,541 bytes]
- (hist) C Shell Scripting [1,502 bytes]
- (hist) MOE [1,469 bytes]
- (hist) Torsion environment [1,445 bytes]
- (hist) 2018 RCR GROUP MEETING [1,442 bytes]
- (hist) DOCK Compilation [1,437 bytes]
- (hist) LoadLeveler Chain Jobs [1,408 bytes]
- (hist) Rotation students Wiki [1,400 bytes]
- (hist) With t4 step2 min.bash [1,373 bytes]
- (hist) No t4 step2 min.bash [1,371 bytes]
- (hist) 2010 RCR GROUP MEETING [1,307 bytes]
- (hist) 2010 LAB [1,307 bytes]
- (hist) Pylab [1,300 bytes]
- (hist) Rizzo Lab Downloads [1,296 bytes]
- (hist) DOCK Tutorials [1,294 bytes]
- (hist) Rizzo Lab General Information for Lab Members [1,286 bytes]
- (hist) DOCK Release Objectives [1,230 bytes]
- (hist) DOCK DN Tutorials [1,225 bytes]
- (hist) AMBER Tutorials [1,202 bytes]
- (hist) PDFCreator [1,195 bytes]
- (hist) Seawulf Cluster Assessment [1,187 bytes]
- (hist) AutoDock Vina Benchmark Results [1,180 bytes]
- (hist) DOCK CV Benchmarking [1,161 bytes]
- (hist) ZINC15 Database [1,092 bytes]
- (hist) Energy Scoring Method in Grid [1,088 bytes]
- (hist) DOCK GA Developer Progress [1,083 bytes]
- (hist) Binding Footprint Program [1,080 bytes]
- (hist) Ptraj [1,041 bytes]
- (hist) DOCK CV Development Goals [1,008 bytes]
- (hist) Joint Group Meeting 2013 [980 bytes]
- (hist) Setting up insurance through Research Foundation [973 bytes]
- (hist) Research Foundation [973 bytes]
- (hist) 2020 DOCK tutorial 4 with PDBID XXXX [956 bytes]
- (hist) Joint Group Meeting 2012 [952 bytes]
- (hist) 2009-2010 GRD-500 Fall-Spring [934 bytes]
- (hist) Joint Group Meeting 2010 [903 bytes]
- (hist) 2010 GRD-500 Spring [902 bytes]
- (hist) Optimize Polar Hydrogens [902 bytes]
- (hist) 2008 RCR GROUP MEETING [890 bytes]
- (hist) 2008-2009 LAB [890 bytes]
- (hist) DOCK GIST Parameters [888 bytes]
- (hist) Remove waters from trajectories [867 bytes]
- (hist) Sed - Stream Editor in Unix [852 bytes]
- (hist) Disulfide.txt [842 bytes]
- (hist) NAMD tutorial [833 bytes]
- (hist) Cancer [801 bytes]
- (hist) Making images for publication using vmd [786 bytes]
- (hist) Installing MSMS for VMD [771 bytes]
- (hist) Tutorials [716 bytes]
- (hist) HIV/AIDS [702 bytes]
- (hist) VMD [695 bytes]
- (hist) Grid.in [692 bytes]
- (hist) Vmd.rmsd.csh [676 bytes]
- (hist) ZINC12 Database [653 bytes]
- (hist) ZINC Database [653 bytes]
- (hist) Footprint Plot Visualization [648 bytes]
- (hist) Main Page [645 bytes]
- (hist) Test Set Tutorial [643 bytes]
- (hist) Joint Group Meeting 2011 [631 bytes]
- (hist) 2016 AMBER tutorial with Thrombin [614 bytes]
- (hist) Testset Objectives [608 bytes]
- (hist) Amber to mol2 (protein) [579 bytes]
- (hist) SDF to mol2 [555 bytes]
- (hist) DOCK Abbreviations Guide [548 bytes]
- (hist) Journal Articles from UCSF [534 bytes]
- (hist) Semester Checklist [491 bytes]
- (hist) General Dock Development Goals [480 bytes]
- (hist) Release [480 bytes]
- (hist) Get time estimate for free blocks [445 bytes]
- (hist) R - Statistical Computing [444 bytes]
- (hist) NAMD to mol2 [437 bytes]
- (hist) Blocked Standard Error of the Mean [415 bytes]
- (hist) De Novo Design (previously NOVA) [413 bytes]
- (hist) NOVA (Navigation and Optimization for Virtual Assembly) [413 bytes]
- (hist) Compiling Applications for BG/L [402 bytes]
- (hist) Histograms in R [397 bytes]
- (hist) Restraint.vmd.script [390 bytes]
- (hist) Advanced Dock Utilities/Information [387 bytes]
- (hist) SB2011 testset [379 bytes]
- (hist) Using convert command unix [379 bytes]
- (hist) Clustering in R [378 bytes]
- (hist) BlueGene [368 bytes]
- (hist) Ways to remove the first line [364 bytes]
- (hist) Advanced Dock Utilities [362 bytes]
- (hist) Example scripts [356 bytes]
- (hist) Octave [350 bytes]
- (hist) Drug-like organic molecules [341 bytes]
- (hist) Submitting BlueGene Jobs [336 bytes]
- (hist) Parameter List/Explanations [327 bytes]
- (hist) Secure Shell (ssh) [323 bytes]
- (hist) Sphere Generation [320 bytes]
- (hist) Unix find [316 bytes]
- (hist) Benchmarking Protocols and Lab SOPs [299 bytes]
- (hist) X-Win32 [297 bytes]
- (hist) Influenza [290 bytes]
- (hist) NOVA [285 bytes]
- (hist) DOCK NOVA [285 bytes]
- (hist) De novo DOCK [285 bytes]
- (hist) DOCK Denovo [285 bytes]
- (hist) Example Input Files [273 bytes]
- (hist) Wiki Editing [271 bytes]
- (hist) Reference.vmd.script [270 bytes]
- (hist) Benchmarking Protocols and Results [261 bytes]
- (hist) Valgrind [252 bytes]
- (hist) Ethernet Cables [244 bytes]
- (hist) Additional DOCK6 Information [241 bytes]
- (hist) Method development [237 bytes]
- (hist) Legacy Info [233 bytes]
- (hist) Which Unix Distribution? [233 bytes]
- (hist) AMBER Lipid Tutorials [232 bytes]
- (hist) Getting a BNL Account [210 bytes]
- (hist) Pdb to mol2 [209 bytes]
- (hist) Common Errors - ctrl M [207 bytes]
- (hist) Get time for job completion [206 bytes]
- (hist) Archiving old data [203 bytes]
- (hist) Gdb (GNU Debugger) [201 bytes]
- (hist) DOCK CV Tutorials [194 bytes]
- (hist) Benchmarking Results [190 bytes]
- (hist) Get Job ids to use for llcancel [181 bytes]
- (hist) Make surface [173 bytes]
- (hist) Rename files in Unix [169 bytes]
- (hist) Amber to pdb [148 bytes]
- (hist) Visiting BNL [140 bytes]
- (hist) General Dock Utilities/Info [132 bytes]
- (hist) General Dock Utilities [132 bytes]
- (hist) DOCK GA Tutorials [116 bytes]
- (hist) CONGA (CONstruction by Genetic Algorithm) [115 bytes]
- (hist) CONGA [115 bytes]
- (hist) Config [114 bytes]
- (hist) DOCK GA Input File(s) [104 bytes]
- (hist) Small Molecule Evolution (DOCK GA) [104 bytes]
- (hist) Ghostscript [103 bytes]
- (hist) DOCK DN Utilities/Info [99 bytes]
- (hist) DOCK DN Utilities [99 bytes]
- (hist) Showbox.in [99 bytes]
- (hist) Making images for publication [91 bytes]
- (hist) 2020 AMS-536 Spring [90 bytes]
- (hist) Gnuplot [84 bytes]
- (hist) Lab SOP [82 bytes]
- (hist) De Novo Design (DOCK DN) [62 bytes]
- (hist) Lab-designed code and programs [55 bytes]
- (hist) Showsph.in [49 bytes]
- (hist) INSPH [47 bytes]
- (hist) 2022 Covalent docking tutorial updated with PDB xxxx [38 bytes]
- (hist) Coming Soon [36 bytes]
- (hist) AMBER tricks [35 bytes]
- (hist) DOCK VS Utilities/Info [31 bytes]
- (hist) DOCK VS Utilities [31 bytes]
- (hist) Ringo.ams.stonybrook.edu [24 bytes]
- (hist) Seawulf Programs Needed [22 bytes]
- (hist) DOCK VS Parameters [21 bytes]
- (hist) Ams.stonybrook.edu [18 bytes]
- (hist) Test Page [17 bytes]
- (hist) 2020 DOCK tutorial 1 with PDBID XXXX [16 bytes]
- (hist) Outdated Info [13 bytes]
- (hist) Stonybrook [10 bytes]
- (hist) 2014 [0 bytes]
- (hist) 2019 Covalent docking tutorial 1 with PDB 2VKG [0 bytes]
- (hist) De Novo Design [0 bytes]
- (hist) 2008 Spring [0 bytes]