Articles with the most revisions

Jump to: navigation, search

Showing below up to 500 results in range #1 to #500.

View (previous 500) (next 500) (20 | 50 | 100 | 250 | 500).

  1. 2025 DOCK tutorial 1 with PDBID 1O86‏‎ (348 revisions)
  2. 2023 DOCK tutorial 1 with PDBID 4S0V‏‎ (264 revisions)
  3. Joe and Brian de novo stuff‏‎ (253 revisions)
  4. Rizzo Lab Members and Contact Information‏‎ (241 revisions)
  5. 2012 DOCK tutorial with Streptavidin‏‎ (230 revisions)
  6. Rizzo Lab Information and Tutorials‏‎ (230 revisions)
  7. 2014 DOCK tutorial with HIV Protease‏‎ (182 revisions)
  8. Rizzo Lab Research‏‎ (182 revisions)
  9. 2012 AMBER Tutorial with Biotin and Streptavidin‏‎ (174 revisions)
  10. 2020 AMS-535 Fall‏‎ (171 revisions)
  11. 2024 AMS-535 Fall‏‎ (165 revisions)
  12. 2016 DOCK tutorial with Beta Trypsin‏‎ (164 revisions)
  13. 2020 DOCK tutorial 1 with PDBID 3VJK‏‎ (158 revisions)
  14. 2010 AMBER Tutorial with Biotin and Streptavidin‏‎ (157 revisions)
  15. 2020 DOCK tutorial 3 with PDBID 4F4P‏‎ (155 revisions)
  16. Test Set Construction SB2024 V1 DOCK6.10 A‏‎ (152 revisions)
  17. 2013 DOCK tutorial with Orotodine Monophosphate Decarboxylase‏‎ (146 revisions)
  18. 2021 DOCK tutorial 2 with PDBID 2ZD1‏‎ (143 revisions)
  19. 2021 DOCK tutorial 1 with PDBID 1HW9‏‎ (142 revisions)
  20. 2019 DOCK tutorial 3 with PDBID 3JQZ‏‎ (138 revisions)
  21. 2019 DOCK tutorial 2 with PDBID 2P16‏‎ (130 revisions)
  22. 2022 DOCK tutorial 1 with PDBID 6ME2‏‎ (120 revisions)
  23. 2010-2011 AMS-532 Fall-Spring‏‎ (119 revisions)
  24. AMS-531 Laboratory Rotations in Computational Biology‏‎ (119 revisions)
  25. 2023 DOCK tutorial 2 with PDBID 3WZE‏‎ (119 revisions)
  26. Rizzo Lab Publications‏‎ (119 revisions)
  27. 2023 AMBER tutorial 1 with PDBID 4S0V‏‎ (118 revisions)
  28. 2020 AMS-536 Spring (revised syllabus)‏‎ (116 revisions)
  29. 2015 DOCK tutorial with Poly(ADP-ribose) polymerase (PARP)‏‎ (112 revisions)
  30. 2023 AMS-535 Fall‏‎ (109 revisions)
  31. 2021 DOCK tutorial 3 with PDBID 1S19‏‎ (108 revisions)
  32. Rizzo Lab Downloads‏‎ (105 revisions)
  33. 2023 DOCK tutorial 3 with PDBID 2P16‏‎ (105 revisions)
  34. 2014 AMBER tutorial with HIV Protease‏‎ (104 revisions)
  35. 2022 DOCK tutorial 3 with PDBID 1X70‏‎ (102 revisions)
  36. 2022 DOCK tutorial 2 with PDBID 4ZUD‏‎ (95 revisions)
  37. 2024 DOCK tutorial 2 with PDBID 1NDV‏‎ (94 revisions)
  38. 2020 DOCK tutorial 4 with PDBID 6UZW‏‎ (93 revisions)
  39. 2018 DOCK tutorial 1 with PDBID 2NNQ‏‎ (93 revisions)
  40. AMBER TI Tutorials‏‎ (88 revisions)
  41. 2021 DOCK tutorial 4 with PDBID 1EFY‏‎ (87 revisions)
  42. 2011 AMBER Tutorial with Biotin and Streptavidin‏‎ (87 revisions)
  43. 2010 DOCK tutorial with Streptavidin‏‎ (86 revisions)
  44. 2013 AMBER Tutorial with UMP and OMP‏‎ (86 revisions)
  45. 2021 AMS-536 Spring‏‎ (85 revisions)
  46. DOCK Denovo Run‏‎ (82 revisions)
  47. AMS-535 Introduction to Computational Structural Biology and Drug Design‏‎ (80 revisions)
  48. 2023 Denovo tutorial 2 with PDBID 3WZE‏‎ (79 revisions)
  49. 2010 AMS-535 Fall‏‎ (79 revisions)
  50. 2025 DOCK tutorial 2 with PDBID 1XMU‏‎ (75 revisions)
  51. 2023 Denovo tutorial 1 with PDBID 4S0V‏‎ (75 revisions)
  52. Developer's Info Goals‏‎ (73 revisions)
  53. AMS-536 Molecular Modeling of Biological Molecules‏‎ (72 revisions)
  54. 2009 AMS-535 Fall‏‎ (66 revisions)
  55. AMS-532 Laboratory Rotations and Journal Club in Computational Biology‏‎ (66 revisions)
  56. Rizzo Lab Weekly Group Meetings‏‎ (64 revisions)
  57. SB2012‏‎ (63 revisions)
  58. 2024 DOCK tutorial 1 with PDBID 2ITO‏‎ (63 revisions)
  59. Cross Docking SB2024 V1 DOCK6.10 A‏‎ (61 revisions)
  60. DOCK VS Development Goals‏‎ (61 revisions)
  61. 2016 AMBER tutorial with Beta Trypsin‏‎ (59 revisions)
  62. Scoring Functions‏‎ (59 revisions)
  63. MD Simulation: Protein in Water‏‎ (58 revisions)
  64. 2011 AMS-535 Fall‏‎ (57 revisions)
  65. 2015 AMBER tutorial with PARP‏‎ (56 revisions)
  66. 2018 DOCK tutorial 2 with PDBID 1C87‏‎ (56 revisions)
  67. 2018 AMBER tutorial with 2nnq‏‎ (54 revisions)
  68. 2019 RCR GROUP MEETING‏‎ (53 revisions)
  69. 2015 RCR GROUP MEETING‏‎ (53 revisions)
  70. 2019 DOCK tutorial 1 with PDBID 2BXF‏‎ (52 revisions)
  71. 2017 RCR GROUP MEETING‏‎ (52 revisions)
  72. 2020 AMBER tutorial with PDBID 3VJK‏‎ (51 revisions)
  73. 2017 DOCK tutorial 2 with PDB 3GPL NEW‏‎ (50 revisions)
  74. 2013 AMS-535 Fall‏‎ (49 revisions)
  75. Database Enrichment SB2024 V1 DOCK6.10 A‏‎ (47 revisions)
  76. 2024 DOCK tutorial 3 with PDBID 1Y0X‏‎ (47 revisions)
  77. DOCK DN Development Goals‏‎ (46 revisions)
  78. 2017 Denovo design tutorial 2 with PDB 4QMZ‏‎ (46 revisions)
  79. DOCK GA Development Goals‏‎ (46 revisions)
  80. AMS-532 Journal Club in Computational Biology‏‎ (46 revisions)
  81. 2011 RCR GROUP MEETING‏‎ (45 revisions)
  82. 2015-2016 AMS-532 Fall-Spring‏‎ (44 revisions)
  83. 2012 RCR GROUP MEETING‏‎ (44 revisions)
  84. De novo Developer Progress‏‎ (44 revisions)
  85. 2023 AMBER tutorial 3 with PDBID 2P16‏‎ (44 revisions)
  86. 2021 AMBER tutorial 3 with PDBID 1S19‏‎ (44 revisions)
  87. 2009-2010 AMS-532 Fall-Spring‏‎ (43 revisions)
  88. 2015 AMS-536 Spring‏‎ (43 revisions)
  89. Pose Reproduction SB2024 V1 DOCK6.10 A‏‎ (42 revisions)
  90. AutoDock4 Pose Reproduction Tutorial‏‎ (41 revisions)
  91. DOCK Tutorials‏‎ (41 revisions)
  92. 2011-2012 AMS-532 Fall-Spring‏‎ (41 revisions)
  93. 2016 AMS-535 Fall‏‎ (40 revisions)
  94. 2021 Denovo tutorial 1 with PDBID 1HW9‏‎ (39 revisions)
  95. 2020 AMS-536 Spring‏‎ (39 revisions)
  96. 2019 Covalent docking tutorial 1 with PDB 5VKG‏‎ (38 revisions)
  97. 2018 AMS-535 Fall‏‎ (38 revisions)
  98. 2021 AMS-535 Fall‏‎ (38 revisions)
  99. 2017 DOCK tutorial 1 with PDB 4QMZ NEW‏‎ (37 revisions)
  100. 2013-2014 AMS-532 Fall-Spring‏‎ (37 revisions)
  101. 2025 Denovo tutorial 2 with PDBID 1XMU‏‎ (36 revisions)
  102. 2012 AMS-535 Fall‏‎ (36 revisions)
  103. 2022 AMS-535 Fall‏‎ (36 revisions)
  104. Virtual Screening Protocol on BlueGene (IGF-IR system)‏‎ (35 revisions)
  105. 2021-2022 AMS-532 Fall-Spring‏‎ (35 revisions)
  106. 2010 AMS-536 Spring‏‎ (34 revisions)
  107. ZINC15 Database‏‎ (34 revisions)
  108. 2015 AMS-535 Fall‏‎ (33 revisions)
  109. 2024 AMBER tutorial 2 with PDBID 1NDV‏‎ (32 revisions)
  110. 2014 RCR GROUP MEETING‏‎ (32 revisions)
  111. SB2010‏‎ (32 revisions)
  112. Amber on Seawulf (compilation)‏‎ (32 revisions)
  113. 2019 Covalent docking tutorial 1 with PDB 2VKG‏‎ (31 revisions)
  114. 2014 AMS-535 Fall‏‎ (31 revisions)
  115. 2024-2025 AMS-532 Fall-Spring‏‎ (30 revisions)
  116. DOCK VS Tutorials‏‎ (30 revisions)
  117. 2013 RCR GROUP MEETING‏‎ (30 revisions)
  118. 2017 AMS-535 Fall‏‎ (29 revisions)
  119. Tutorials‏‎ (29 revisions)
  120. 2016-2017 AMS-532 Fall-Spring‏‎ (29 revisions)
  121. 2019-2020 AMS-532 Fall-Spring‏‎ (29 revisions)
  122. Parameter List‏‎ (28 revisions)
  123. 2022 AMS-536 Spring‏‎ (28 revisions)
  124. 2011 DOCK tutorial with Streptavidin‏‎ (28 revisions)
  125. 2014 AMS-536 Spring‏‎ (27 revisions)
  126. 2021 Denovo tutorial 3 with PDBID 1S19‏‎ (27 revisions)
  127. AMBER Tutorials‏‎ (27 revisions)
  128. 2019 Denovo design tutorial 3 with PDB 3JQZ‏‎ (27 revisions)
  129. 2013 AMS-536 Spring‏‎ (27 revisions)
  130. Analysis Tools Repository‏‎ (27 revisions)
  131. Stony Brook Joint Group Meetings in Computational Structural Biology‏‎ (26 revisions)
  132. 2019 Denovo design tutorial 2 with PDB 2P16‏‎ (26 revisions)
  133. 2011 AMS-536 Spring‏‎ (26 revisions)
  134. 2019 AMS-535 Fall‏‎ (26 revisions)
  135. 2020 AMS-536 Spring (original syllabus)‏‎ (26 revisions)
  136. 2016 AMS-536 Spring‏‎ (26 revisions)
  137. 2019 Denovo design tutorial 1 with PDB 2BXF‏‎ (25 revisions)
  138. 2024 AMS-536 Spring‏‎ (25 revisions)
  139. 2022 Denovo tutorial 2 with PDBID 4ZUD‏‎ (24 revisions)
  140. 2018 Denovo design tutorial 1 with PDB 2NNQ‏‎ (24 revisions)
  141. 2023 AMS-536 Spring‏‎ (24 revisions)
  142. 2017-2018 AMS-532 Fall-Spring‏‎ (23 revisions)
  143. 2019 AMBER tutorial with PDBID 2BXF‏‎ (23 revisions)
  144. 2018-2019 AMS-532 Fall-Spring‏‎ (22 revisions)
  145. 2012 AMS-536 Spring‏‎ (22 revisions)
  146. 2017 AMBER tutorial with 4qmz‏‎ (22 revisions)
  147. 2023 AMBER tutorial 2 with PDBID 3WZE‏‎ (22 revisions)
  148. Main Page‏‎ (22 revisions)
  149. 2021 AMBER tutorial 1 with PDBID 1HW9‏‎ (22 revisions)
  150. Virtual Screening Protocol‏‎ (21 revisions)
  151. 2020-2021 AMS-532 Fall-Spring‏‎ (21 revisions)
  152. 2020 Denovo tutorial 4 with PDBID 6UZW‏‎ (21 revisions)
  153. How to purchase compounds for Rizzo lab‏‎ (21 revisions)
  154. NAMD Amber inputs‏‎ (20 revisions)
  155. 2024 DOCK GA tutorial 1 with 1NDV‏‎ (20 revisions)
  156. 2022 AMBER tutorial 1 with PDBID 6ME2‏‎ (20 revisions)
  157. Make Unique script usage‏‎ (20 revisions)
  158. 2017 Dock tutorial‏‎ (20 revisions)
  159. 2023-2024 AMS-532 Fall-Spring‏‎ (19 revisions)
  160. DOCK6 POSE Reproduction‏‎ (19 revisions)
  161. SB2021.v1‏‎ (19 revisions)
  162. 2024 Denovo tutorial 1 with PDBID 2ITO‏‎ (19 revisions)
  163. 2019 AMS-536 Spring‏‎ (19 revisions)
  164. Seawulf Items Needed‏‎ (18 revisions)
  165. 2022 Denovo tutorial 3 with PDBID 1X70‏‎ (18 revisions)
  166. 2022-2023 AMS-532 Fall-Spring‏‎ (18 revisions)
  167. Development Goals Archive‏‎ (18 revisions)
  168. 2023 Denovo tutorial 3 with PDBID 2P16‏‎ (17 revisions)
  169. 2022 RCR GROUP MEETING‏‎ (17 revisions)
  170. DGHYD‏‎ (17 revisions)
  171. 2014-2015 AMS-532 Fall-Spring‏‎ (17 revisions)
  172. 2016 RCR GROUP MEETING‏‎ (16 revisions)
  173. Formating your Thesis‏‎ (16 revisions)
  174. DOCK DN Tutorials‏‎ (15 revisions)
  175. 2016 AMBER tutorial with Thrombin‏‎ (15 revisions)
  176. Benchmarking Protocols and Lab SOPs‏‎ (15 revisions)
  177. 2025 DOCK GA tutorial 2 with 1XMU‏‎ (15 revisions)
  178. 2022 Denovo tutorial 1 with PDBID 6ME2‏‎ (14 revisions)
  179. 2020 DOCK tutorial 2 with PDBID 2GQG‏‎ (14 revisions)
  180. 2020 DOCK tutorial 2 with PDBID XXXX‏‎ (14 revisions)
  181. 2018 AMS-536 Spring‏‎ (14 revisions)
  182. 2020 Denovo tutorial 1 with PDBID 3VJK‏‎ (14 revisions)
  183. 2021 Denovo tutorial 4 with PDBID 1EFY‏‎ (14 revisions)
  184. Seawulf Cluster Assessment‏‎ (14 revisions)
  185. 2012-2013 AMS-532 Fall-Spring‏‎ (13 revisions)
  186. 2018 AMBER tutorial with 1c87‏‎ (13 revisions)
  187. DOCK Release Objectives‏‎ (13 revisions)
  188. Per-residue energy decompositions‏‎ (13 revisions)
  189. BASH scripting‏‎ (13 revisions)
  190. 2020 Denovo tutorial 3 with PDBID 4F4P‏‎ (13 revisions)
  191. CONGA Parameter List‏‎ (13 revisions)
  192. Energy Scoring Method in Grid‏‎ (13 revisions)
  193. Useful Slurm Commands‏‎ (13 revisions)
  194. 2024 AMBER tutorial 3 with PDBID 1Y0X‏‎ (12 revisions)
  195. De novo Benchmarking‏‎ (12 revisions)
  196. Server Administration‏‎ (12 revisions)
  197. 2018 Denovo design tutorial 2 with PDB 1C87‏‎ (12 revisions)
  198. 2018 RCR GROUP MEETING‏‎ (12 revisions)
  199. Rizzo Lab General Information for Lab Members‏‎ (12 revisions)
  200. Stupid awk tricks‏‎ (11 revisions)
  201. 3D Analog Library Generation Using Pubchem and Zinc‏‎ (11 revisions)
  202. Activating your Seawulf Account‏‎ (11 revisions)
  203. Joint Group Meeting 2010‏‎ (11 revisions)
  204. Joint Group Meeting 2011‏‎ (11 revisions)
  205. Nonstandard residues prep‏‎ (11 revisions)
  206. 2017 Denovo refine tutorial with PDB 1BJU‏‎ (11 revisions)
  207. Benchmarking Protocols and Results‏‎ (11 revisions)
  208. Benchmarking Results‏‎ (10 revisions)
  209. 2019 DOCK GA tutorial 1 with 2NNQ‏‎ (10 revisions)
  210. Compiling GROMACS on Cluster‏‎ (10 revisions)
  211. 2010 LAB‏‎ (10 revisions)
  212. PBS Queue‏‎ (10 revisions)
  213. Apply for cluster‏‎ (10 revisions)
  214. MATLAB‏‎ (9 revisions)
  215. Past Announcements‏‎ (9 revisions)
  216. AutoDock Vina Pose Reproduction Tutorial‏‎ (9 revisions)
  217. DOCK Denovo‏‎ (9 revisions)
  218. MPICH‏‎ (9 revisions)
  219. Unix‏‎ (9 revisions)
  220. Chimera‏‎ (9 revisions)
  221. GRD-500 Integrity in Science‏‎ (9 revisions)
  222. DOCK GA Tutorials‏‎ (9 revisions)
  223. AutoDock4 Benchmark Results‏‎ (8 revisions)
  224. Torsion environment‏‎ (8 revisions)
  225. DOCK VS Benchmarking‏‎ (8 revisions)
  226. DOCK Denovo Refinement‏‎ (8 revisions)
  227. DOCK Benchmarking‏‎ (8 revisions)
  228. DOCK CV Benchmarking‏‎ (8 revisions)
  229. 2025 AMS-536 Spring‏‎ (8 revisions)
  230. Small Molecule Evolution (DOCK GA)‏‎ (8 revisions)
  231. Release‏‎ (8 revisions)
  232. Legacy Info‏‎ (7 revisions)
  233. 2024 AMBER tutorial 1 with PDBID 2ITO‏‎ (7 revisions)
  234. Testset Objectives‏‎ (7 revisions)
  235. MD Simulation: Protein in Water (Pt. 2)‏‎ (7 revisions)
  236. 2008 DOCK tutorial with Gleevec‏‎ (7 revisions)
  237. MOE‏‎ (7 revisions)
  238. 2022 AMBER tutorial 3 with PDBID 1X70‏‎ (7 revisions)
  239. Fragment Library Generation‏‎ (7 revisions)
  240. Example of an Input file‏‎ (6 revisions)
  241. De Novo Design (DOCK DN)‏‎ (6 revisions)
  242. Automated Families generation from the Protein Databank‏‎ (6 revisions)
  243. 2017 AMS-536 Spring‏‎ (6 revisions)
  244. Dell 5110cn Printer‏‎ (6 revisions)
  245. DOCK GIST Parameters‏‎ (5 revisions)
  246. 2008 AMS-535 Fall‏‎ (5 revisions)
  247. Installing DOCK‏‎ (5 revisions)
  248. VMD‏‎ (5 revisions)
  249. Rsync‏‎ (5 revisions)
  250. Vi‏‎ (5 revisions)
  251. Xmgrace‏‎ (5 revisions)
  252. NOVA (Navigation and Optimization for Virtual Assembly)‏‎ (5 revisions)
  253. Joint Group Meeting 2007-2009‏‎ (5 revisions)
  254. 2017 Denovo design tutorial 1 with PDB 1BJU‏‎ (5 revisions)
  255. Joint Group Meeting 2013‏‎ (5 revisions)
  256. C Shell Scripting‏‎ (5 revisions)
  257. 2024 Denovo tutorial 3 with PDBID 1Y0X‏‎ (5 revisions)
  258. 2009 RCR GROUP MEETING‏‎ (5 revisions)
  259. Scp files from cluster to NYBlue‏‎ (5 revisions)
  260. Cluster compilations‏‎ (5 revisions)
  261. DOCK GA Parameters‏‎ (5 revisions)
  262. 2008-2009 LAB‏‎ (5 revisions)
  263. LoadLeveler Chain Jobs‏‎ (4 revisions)
  264. 2008 AMS-536 Spring‏‎ (4 revisions)
  265. Semester Checklist‏‎ (4 revisions)
  266. 2008 RCR GROUP MEETING‏‎ (4 revisions)
  267. SB2011 testset‏‎ (4 revisions)
  268. 2009-2010 GRD-500 Fall-Spring‏‎ (4 revisions)
  269. 2010 RCR GROUP MEETING‏‎ (4 revisions)
  270. DOCK Abbreviations Guide‏‎ (4 revisions)
  271. HIV/AIDS‏‎ (4 revisions)
  272. SLURM‏‎ (4 revisions)
  273. 2009 DOCK tutorial with neuraminidase‏‎ (4 revisions)
  274. DOCK CV Tutorials‏‎ (4 revisions)
  275. 2008 AMBER tutorial‏‎ (3 revisions)
  276. Example of an CONGA Input file‏‎ (3 revisions)
  277. General Dock Utilities‏‎ (3 revisions)
  278. 2018‏‎ (3 revisions)
  279. Rotation students Wiki‏‎ (3 revisions)
  280. AutoDock Vina Benchmark Results‏‎ (3 revisions)
  281. 2008 DOCK tutorial with 1LAH‏‎ (3 revisions)
  282. Example of an Single Molecule Evolution Input file‏‎ (3 revisions)
  283. Additional DOCK6 Information‏‎ (3 revisions)
  284. 2021 Denovo tutorial 2 with PDBID 2ZD1‏‎ (3 revisions)
  285. BlueGene‏‎ (3 revisions)
  286. Advanced Dock Utilities/Information‏‎ (3 revisions)
  287. 2012 GRD-500 Spring‏‎ (3 revisions)
  288. Virtual Screening Compound Ordering SOP‏‎ (3 revisions)
  289. Setting up RSA SecureID token‏‎ (3 revisions)
  290. Joint Group Meeting 2012‏‎ (3 revisions)
  291. 2009 AMBER tutorial with Trpcage‏‎ (3 revisions)
  292. SDF to mol2‏‎ (3 revisions)
  293. Fourier fit‏‎ (3 revisions)
  294. RGD‏‎ (3 revisions)
  295. AMS-532 Guidlines‏‎ (3 revisions)
  296. R - Statistical Computing‏‎ (3 revisions)
  297. DOCK CV Input File(s)‏‎ (3 revisions)
  298. Unix find‏‎ (3 revisions)
  299. 2017a DOCK tutorial‏‎ (2 revisions)
  300. NAMD on Seawulf‏‎ (2 revisions)
  301. 2010-2011 GRD-500 Fall-Spring‏‎ (2 revisions)
  302. Example of an Ensemble Evolution Input file‏‎ (2 revisions)
  303. Genion.mdp‏‎ (2 revisions)
  304. Parameter List/Explanations‏‎ (2 revisions)
  305. De Novo Design‏‎ (2 revisions)
  306. Get Job ids to use for llcancel‏‎ (2 revisions)
  307. Sed - Stream Editor in Unix‏‎ (2 revisions)
  308. DOCK DN Parameters‏‎ (2 revisions)
  309. Valgrind‏‎ (2 revisions)
  310. Testset Protocols‏‎ (2 revisions)
  311. DOCK DN Utilities‏‎ (2 revisions)
  312. Getting a BNL Account‏‎ (2 revisions)
  313. No t4 step1 inputgen.bash‏‎ (2 revisions)
  314. CONGA‏‎ (2 revisions)
  315. Footprint Plot Visualization‏‎ (2 revisions)
  316. ZINC Database‏‎ (2 revisions)
  317. Ps.m2p‏‎ (2 revisions)
  318. Amber to mol2 (protein)‏‎ (2 revisions)
  319. Ubq min.mdp‏‎ (2 revisions)
  320. Ubq npt.mdp‏‎ (2 revisions)
  321. CVS Commands‏‎ (2 revisions)
  322. Ubq nvt.mdp‏‎ (2 revisions)
  323. Pylab‏‎ (2 revisions)
  324. AMS-532: Lab Rotations/Journal Club Guidelines‏‎ (2 revisions)
  325. 2009 AMS-536 Spring‏‎ (2 revisions)
  326. DOCK CV Development Goals‏‎ (2 revisions)
  327. Making images for publication using vmd‏‎ (2 revisions)
  328. 2017 Denovo refinement tutorial with PDB 1BJU‏‎ (2 revisions)
  329. Method development‏‎ (2 revisions)
  330. 2014‏‎ (2 revisions)
  331. Ethernet Cables‏‎ (2 revisions)
  332. Gdb (GNU Debugger)‏‎ (2 revisions)
  333. Lab SOP‏‎ (2 revisions)
  334. Sphere Generation‏‎ (2 revisions)
  335. DOCK Compilation‏‎ (2 revisions)
  336. 2011 GRD-500 Spring‏‎ (2 revisions)
  337. Test Set Construction‏‎ (1 revisions - redirect page)
  338. Input for md‏‎ (1 revisions - redirect page)
  339. Using Small Ligands with AMBER, complete tutorial‏‎ (1 revisions - redirect page)
  340. With t4 step1 inputgen.bash‏‎ (1 revisions)
  341. PDFCreator‏‎ (1 revisions)
  342. Remove waters from trajectories‏‎ (1 revisions)
  343. Archiving old data‏‎ (1 revisions)
  344. Coming Soon‏‎ (1 revisions)
  345. DOCK DN Benchmarking‏‎ (1 revisions)
  346. Database Enrichment‏‎ (1 revisions - redirect page)
  347. Input for min‏‎ (1 revisions - redirect page)
  348. Using convert command unix‏‎ (1 revisions)
  349. 2020 DOCK tutorial 1 with PDBID XXXX‏‎ (1 revisions)
  350. With t4 step2 equiprod.bash‏‎ (1 revisions)
  351. Rename files in Unix‏‎ (1 revisions)
  352. Rizzo Lab Wiki‏‎ (1 revisions - redirect page)
  353. Seawulf Programs Needed‏‎ (1 revisions)
  354. Stonybrook‏‎ (1 revisions)
  355. Benchmarking Tutorials & Lab SOPs‏‎ (1 revisions - redirect page)
  356. Common Errors - ctrl M‏‎ (1 revisions)
  357. DOCK Installation‏‎ (1 revisions)
  358. 2016 DOCK tutorial with Thrombin‏‎ (1 revisions - redirect page)
  359. General Dock Utilities/Info‏‎ (1 revisions)
  360. Test Set Tutorial‏‎ (1 revisions)
  361. With t4 step2 min.bash‏‎ (1 revisions)
  362. NAMD to mol2‏‎ (1 revisions)
  363. Research Foundation‏‎ (1 revisions)
  364. Robert C. Rizzo Research Group‏‎ (1 revisions - redirect page)
  365. Secure Shell (ssh)‏‎ (1 revisions)
  366. AMS 532: Lab Rotations/Journal Club Guidelines‏‎ (1 revisions - redirect page)
  367. Benchmarking Tutorials and Lab SOPs‏‎ (1 revisions - redirect page)
  368. Compiling Applications for BG/L‏‎ (1 revisions)
  369. DOCK DN Input File(s)‏‎ (1 revisions)
  370. DOCK NOVA‏‎ (1 revisions)
  371. Test Set Tutorial V1‏‎ (1 revisions - redirect page)
  372. Installing MSMS for VMD‏‎ (1 revisions)
  373. VMD tutorial‏‎ (1 revisions - redirect page)
  374. With t4 step3 inputgen.bash‏‎ (1 revisions)
  375. NAMD tutorial‏‎ (1 revisions)
  376. Restraint.vmd.script‏‎ (1 revisions)
  377. Submitting BleuGene Jobs‏‎ (1 revisions - redirect page)
  378. Binding Footprint Program‏‎ (1 revisions)
  379. Get time estimate for free blocks‏‎ (1 revisions)
  380. Integration.pl‏‎ (1 revisions)
  381. X-Win32‏‎ (1 revisions)
  382. NOVA‏‎ (1 revisions)
  383. Pdb to mol2‏‎ (1 revisions)
  384. Restraint01.pdb‏‎ (1 revisions)
  385. AMBER Lipid Tutorials‏‎ (1 revisions)
  386. Submitting BlueGene Jobs‏‎ (1 revisions)
  387. Blocked Standard Error of the Mean‏‎ (1 revisions)
  388. Config‏‎ (1 revisions)
  389. DOCK Tutorial with 1LAH‏‎ (1 revisions - redirect page)
  390. De Novo Design (previously NOVA)‏‎ (1 revisions)
  391. Example scripts‏‎ (1 revisions)
  392. Get time for job completion‏‎ (1 revisions)
  393. MD of Protein in Water‏‎ (1 revisions - redirect page)
  394. Restraint04.pdb‏‎ (1 revisions)
  395. Run.java.csh‏‎ (1 revisions)
  396. Sequence alignment‏‎ (1 revisions)
  397. Advanced Dock Utilities‏‎ (1 revisions)
  398. TESTSET OBJECTIVES‏‎ (1 revisions - redirect page)
  399. Cross Docking‏‎ (1 revisions - redirect page)
  400. Families in the Protein Databank‏‎ (1 revisions)
  401. Vi tutorial‏‎ (1 revisions - redirect page)
  402. 2020 DOCK tutorial 4 with PDBID XXXX‏‎ (1 revisions)
  403. ZINC12 Database‏‎ (1 revisions)
  404. Pose Reproduction‏‎ (1 revisions - redirect page)
  405. Rigid.in‏‎ (1 revisions)
  406. TIMD extraction.py‏‎ (1 revisions)
  407. Automated Family generation from PDB‏‎ (1 revisions)
  408. BlueGene LoadLeveler Jobs with Multiple Steps (Chain Jobs)‏‎ (1 revisions - redirect page)
  409. 01mi.in‏‎ (1 revisions)
  410. 2008 Spring‏‎ (1 revisions)
  411. DOCK DN Utilities/Info‏‎ (1 revisions)
  412. 2010 GRD-500 Spring‏‎ (1 revisions)
  413. De novo DOCK‏‎ (1 revisions)
  414. Flex.in‏‎ (1 revisions)
  415. Ghostscript‏‎ (1 revisions)
  416. MOE Tutorial‏‎ (1 revisions - redirect page)
  417. No t4 step2 equiprod.bash‏‎ (1 revisions)
  418. Ringo.ams.stonybrook.edu‏‎ (1 revisions)
  419. AMBER tricks‏‎ (1 revisions)
  420. TIMD integration.py‏‎ (1 revisions)
  421. 04md.in‏‎ (1 revisions)
  422. Gnuplot‏‎ (1 revisions)
  423. Ubq md.mdp‏‎ (1 revisions)
  424. 2020 Denovo tutorial 2 with PDBID 2GQG‏‎ (1 revisions)
  425. No t4 step2 min.bash‏‎ (1 revisions)
  426. Rizzo Lab-specific Information and Tutorials‏‎ (1 revisions - redirect page)
  427. AMBER tutorial‏‎ (1 revisions - redirect page)
  428. Setting up insurance through Research Foundation‏‎ (1 revisions)
  429. TIMD integration prep.py‏‎ (1 revisions)
  430. BOSS Pure Liquid Simulation‏‎ (1 revisions - redirect page)
  431. CONGA (CONstruction by Genetic Algorithm)‏‎ (1 revisions)
  432. 2006-2007 AMS-532 Fall-Spring‏‎ (1 revisions)
  433. DOCK VS Parameters‏‎ (1 revisions)
  434. Grid.in‏‎ (1 revisions)
  435. No t4 step3 inputgen.bash‏‎ (1 revisions)
  436. Ptraj‏‎ (1 revisions)
  437. Rizzo Lab Contact Information‏‎ (1 revisions - redirect page)
  438. AMBER tutorial with Trpcage‏‎ (1 revisions - redirect page)
  439. Setup ssh tunnel to NYBlue fen‏‎ (1 revisions)
  440. Amber to pdb‏‎ (1 revisions)
  441. BOSS Pure Liquid Simulation Notes‏‎ (1 revisions)
  442. 2007-2006 AMS-532 Fall-Spring‏‎ (1 revisions - redirect page)
  443. Formatting your Thesis‏‎ (1 revisions)
  444. Virtual Screening SOP‏‎ (1 revisions - redirect page)
  445. Pure Liquid Simulation‏‎ (1 revisions - redirect page)
  446. Showbox.in‏‎ (1 revisions)
  447. Ams.stonybrook.edu‏‎ (1 revisions)
  448. BOSS pure liquid simulation‏‎ (1 revisions - redirect page)
  449. 2007-2008 AMS-532 Fall-Spring‏‎ (1 revisions)
  450. DOCK GA Developer Progress‏‎ (1 revisions)
  451. 2011-2012 GRD-500 Fall-Spring‏‎ (1 revisions)
  452. DOCK VS Utilities‏‎ (1 revisions)
  453. Hello World‏‎ (1 revisions - redirect page)
  454. Journal Articles from UCSF‏‎ (1 revisions)
  455. Visiting BNL‏‎ (1 revisions)
  456. Make surface‏‎ (1 revisions)
  457. Octave‏‎ (1 revisions)
  458. Showsph.in‏‎ (1 revisions)
  459. Analog Library - Pubchem & Zinc‏‎ (1 revisions)
  460. Benchmarking‏‎ (1 revisions - redirect page)
  461. 2007-2009‏‎ (1 revisions - redirect page)
  462. DOCK VS Utilities/Info‏‎ (1 revisions)
  463. Disulfide.txt‏‎ (1 revisions)
  464. 2017 Denovo design tutorial with PDB 1BJU‏‎ (1 revisions)
  465. Histograms in R‏‎ (1 revisions)
  466. Lab-designed code and programs‏‎ (1 revisions)
  467. Vmd.rmsd.csh‏‎ (1 revisions)
  468. Making images for publication‏‎ (1 revisions)
  469. Optimize Polar Hydrogens‏‎ (1 revisions)
  470. Sampling Methods‏‎ (1 revisions)
  471. Simple Protein in Water MD‏‎ (1 revisions - redirect page)
  472. Benchmarking Lab SOP and Results‏‎ (1 revisions - redirect page)
  473. Cancer‏‎ (1 revisions)
  474. 2008-2007 AMS-532 Fall-Spring‏‎ (1 revisions - redirect page)
  475. DOCK GA Input File(s)‏‎ (1 revisions)
  476. DOCK tutorial‏‎ (1 revisions - redirect page)
  477. Drug-like organic molecules‏‎ (1 revisions)
  478. Free Energy of Hydration Test-set‏‎ (1 revisions - redirect page)
  479. Unix Tutorial‏‎ (1 revisions - redirect page)
  480. Lab-specific Information and Tutorials‏‎ (1 revisions - redirect page)
  481. Ways to remove the first line‏‎ (1 revisions)
  482. Other Meetings‏‎ (1 revisions)
  483. 2022 Covalent docking tutorial updated with PDB xxxx‏‎ (1 revisions)
  484. Slick awk tricks‏‎ (1 revisions)
  485. Announcements: Fall 2013‏‎ (1 revisions)
  486. Benchmarking Lab SOPs‏‎ (1 revisions - redirect page)
  487. 2008-2009‏‎ (1 revisions - redirect page)
  488. DOCK GA Parameter List‏‎ (1 revisions)
  489. DOCK tutorial with 1LAH‏‎ (1 revisions - redirect page)
  490. INSPH‏‎ (1 revisions)
  491. Lab-specific Tutorials‏‎ (1 revisions - redirect page)
  492. Which Unix Distribution?‏‎ (1 revisions)
  493. Outdated Info‏‎ (1 revisions)
  494. Reference.vmd.script‏‎ (1 revisions)
  495. 2023 DOCK tutorial 3 with PDBID 5UPG‏‎ (1 revisions - redirect page)
  496. Apply for NYBlue‏‎ (1 revisions)
  497. 2008-2009 AMS-532 Fall-Spring‏‎ (1 revisions)
  498. 200 Codes DoorDash Gift Card Code Generator Unused 2024 Update No Human Verification‏‎ (1 revisions)
  499. DOCK tutorial with Gleevec‏‎ (1 revisions - redirect page)
  500. Test Page‏‎ (1 revisions)

View (previous 500) (next 500) (20 | 50 | 100 | 250 | 500).

Retrieved from "https://ringo.ams.stonybrook.edu/index.php/Special:MostRevisions"